Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 108.78584 * 2 1 4 4 C 1.54072 * 108.81114 * 241.59705 * 2 1 3 5 5 C 1.50475 * 112.49677 * 197.42191 * 4 2 1 6 6 C 1.54236 * 108.52691 * 94.14827 * 5 4 2 7 7 C 1.45538 * 112.40589 * 280.01611 * 6 5 4 8 8 C 1.54239 * 112.40788 * 61.93373 * 7 6 5 9 9 C 1.50474 * 108.68161 * 279.91465 * 8 7 6 10 10 H 1.08995 * 108.87732 * 333.46553 * 9 8 7 11 11 C 1.50703 * 108.87581 * 215.02526 * 9 8 7 12 12 H 1.07998 * 120.00318 * 245.34923 * 11 9 8 13 13 C 1.37878 * 119.99615 * 65.35074 * 11 9 8 14 14 N 1.31511 * 120.00677 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99765 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47398 * 89.99941 * 15 13 11 17 17 H 1.48501 * 109.47030 * 209.99893 * 15 13 11 18 18 H 1.48502 * 109.47168 * 329.99654 * 15 13 11 19 19 H 1.09001 * 109.46977 * 188.98992 * 1 2 3 20 20 H 1.09003 * 109.46881 * 308.98724 * 1 2 3 21 21 H 1.08996 * 109.47244 * 68.99205 * 1 2 3 22 22 H 1.08997 * 108.87647 * 76.64580 * 4 2 1 23 23 H 1.08999 * 108.87788 * 318.19504 * 4 2 1 24 24 H 1.08997 * 109.62740 * 334.43647 * 5 4 2 25 25 H 1.09000 * 109.78622 * 213.95632 * 5 4 2 26 26 H 1.09002 * 108.89568 * 159.25844 * 6 5 4 27 27 H 1.09001 * 108.81501 * 40.71350 * 6 5 4 28 28 H 1.09002 * 108.89439 * 301.18063 * 7 6 5 29 29 H 1.09000 * 108.89479 * 182.68662 * 7 6 5 30 30 H 1.09000 * 109.63052 * 39.72168 * 8 7 6 31 31 H 1.09003 * 109.63085 * 160.10643 * 8 7 6 32 32 H 0.96996 * 120.00400 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0268 -0.6937 -1.2829 5 6 3.4681 -1.1157 -1.1880 6 6 3.5190 -2.5835 -0.7171 7 6 3.3394 -2.7111 0.7215 8 6 1.9648 -2.1921 1.1907 9 6 2.0236 -0.6916 1.2875 10 1 3.0546 -0.3903 1.4725 11 6 1.1721 -0.2441 2.4475 12 1 0.2860 0.3474 2.2705 13 6 1.5243 -0.5899 3.7349 14 7 2.6030 -1.3106 3.9506 15 14 0.4684 -0.0359 5.1729 16 1 -0.5711 -1.0601 5.4473 17 1 1.3219 0.1378 6.3757 18 1 -0.1848 1.2553 4.8388 19 1 -0.3633 -1.0151 0.1606 20 1 -0.3633 0.6466 0.7988 21 1 -0.3633 0.3684 -0.9593 22 1 1.9150 -0.0064 -2.1214 23 1 1.4128 -1.5752 -1.4675 24 1 3.9884 -0.4824 -0.4696 25 1 3.9433 -1.0278 -2.1651 26 1 4.4844 -3.0089 -0.9915 27 1 2.7311 -3.1423 -1.2222 28 1 4.1218 -2.1446 1.2265 29 1 3.4329 -3.7616 0.9970 30 1 1.1988 -2.4829 0.4719 31 1 1.7286 -2.6131 2.1680 32 1 2.8506 -1.5541 4.8563 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060247705.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = -30.924485 kcal Electronic energy + Delta-G solvation = -11830.247580 eV Core-core repulsion = 9982.520728 eV Total energy + Delta-G solvation = -1847.726852 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.23813 -33.49319 -32.42300 -30.36272 -26.76253 -25.37701 -22.38581 -22.11278 -19.58773 -17.70028 -16.09951 -15.05183 -14.18567 -13.89233 -13.57564 -12.93088 -12.33072 -12.27875 -11.90344 -11.19999 -11.12118 -10.78795 -10.74276 -10.73423 -10.35023 -10.00653 -9.77277 -9.58687 -9.43771 -9.02738 -8.77337 -8.37555 -8.15261 -5.89140 -3.92574 3.35002 3.42022 3.44760 4.51525 5.38112 5.46765 5.59609 5.63188 6.04544 6.16963 6.19224 6.35386 6.40659 6.44979 6.51964 6.69689 6.77544 6.81771 6.93400 6.96523 7.06002 7.17772 7.21467 7.30387 7.49577 7.73447 7.90127 8.12443 8.23345 8.61776 9.14078 9.70995 11.18324 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.050698 B = 0.015020 C = 0.012469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.155899 B = 1863.783948 C = 2245.113526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.046 0.954 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.086 4.086 9 C 0.052 3.948 10 H 0.027 0.973 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.883 3.117 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.276 1.276 19 H 0.049 0.951 20 H 0.060 0.940 21 H 0.022 0.978 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -0.634 -7.152 7.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.064 0.936 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.124 4.124 9 C 0.034 3.966 10 H 0.045 0.955 11 C -0.551 4.551 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.712 3.288 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.201 1.201 19 H 0.068 0.932 20 H 0.079 0.921 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.057 -0.710 -7.001 7.037 hybrid contribution -0.508 0.224 0.923 1.077 sum -0.564 -0.486 -6.079 6.124 Atomic orbital electron populations 1.21832 0.96778 1.01575 0.98737 1.21609 0.94971 0.98468 0.95063 0.93590 1.21396 0.95887 0.99686 0.97716 1.21290 0.97311 0.96875 0.99686 1.20480 0.99724 0.96154 0.98067 1.20439 1.00920 0.99501 0.94458 1.21279 0.92547 0.98781 0.99814 1.18528 0.96871 0.91374 0.89857 0.95461 1.21542 1.10103 1.32629 0.90875 0.92128 1.24973 0.95103 0.95497 0.98669 1.69985 1.24362 1.37917 1.20501 0.86736 0.80446 0.79012 0.82612 1.20922 1.21467 1.20099 0.93241 0.92111 0.95880 0.94222 0.92872 0.91505 0.93573 0.94113 0.93396 0.92274 0.94661 0.95591 0.90912 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 8.19 37.16 0.30 -2.32 16 2 C -0.08 -1.73 2.51 -89.40 -0.22 -1.95 16 3 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.96 4.65 -27.43 -0.13 -2.09 16 5 C -0.11 -1.98 5.61 -27.35 -0.15 -2.13 16 6 C -0.11 -1.88 5.26 -29.60 -0.16 -2.04 16 7 C -0.12 -2.41 5.26 -29.60 -0.16 -2.57 16 8 C -0.09 -2.03 4.64 -27.34 -0.13 -2.16 16 9 C 0.05 1.28 1.30 -92.37 -0.12 1.16 16 10 H 0.03 0.74 6.64 -51.93 -0.34 0.40 16 11 C -0.51 -13.90 7.80 -34.44 -0.27 -14.17 16 12 H 0.06 1.62 5.34 -52.49 -0.28 1.34 16 13 C 0.06 1.62 5.02 -17.82 -0.09 1.53 16 14 N -0.89 -25.51 12.04 55.43 0.67 -24.84 16 15 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H 0.05 1.00 7.28 -51.93 -0.38 0.62 16 20 H 0.06 1.26 6.04 -51.93 -0.31 0.95 16 21 H 0.02 0.39 8.10 -51.93 -0.42 -0.03 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.95 6.47 -51.93 -0.34 0.61 16 24 H 0.07 1.26 6.99 -51.93 -0.36 0.90 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.81 7.46 -51.93 -0.39 0.42 16 28 H 0.06 1.34 7.48 -51.93 -0.39 0.96 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.57 6.20 -51.93 -0.32 0.25 16 31 H 0.07 1.95 6.38 -51.93 -0.33 1.61 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 236.53 15.07 3.56 3.56 Total: -1.00 -27.52 236.53 -7.02 -34.54 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -5.11 Total: -2.95 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -1.12 Total: -26.74 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.67 Total: -24.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.52 -7.02 -34.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247705.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.614 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds