Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 108.78584 * 2 1 4 4 C 1.54072 * 108.81114 * 241.59705 * 2 1 3 5 5 C 1.50475 * 112.49677 * 197.42191 * 4 2 1 6 6 C 1.54236 * 108.52691 * 94.14827 * 5 4 2 7 7 C 1.45538 * 112.40589 * 280.01611 * 6 5 4 8 8 C 1.54239 * 112.40788 * 61.93373 * 7 6 5 9 9 C 1.50474 * 108.68161 * 279.91465 * 8 7 6 10 10 H 1.08995 * 108.87732 * 333.46553 * 9 8 7 11 11 C 1.50703 * 108.87581 * 215.02526 * 9 8 7 12 12 H 1.07998 * 120.00318 * 245.34923 * 11 9 8 13 13 C 1.37878 * 119.99615 * 65.35074 * 11 9 8 14 14 N 1.31511 * 120.00677 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99765 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47398 * 89.99941 * 15 13 11 17 17 H 1.48501 * 109.47030 * 209.99893 * 15 13 11 18 18 H 1.48502 * 109.47168 * 329.99654 * 15 13 11 19 19 H 1.09001 * 109.46977 * 188.98992 * 1 2 3 20 20 H 1.09003 * 109.46881 * 308.98724 * 1 2 3 21 21 H 1.08996 * 109.47244 * 68.99205 * 1 2 3 22 22 H 1.08997 * 108.87647 * 76.64580 * 4 2 1 23 23 H 1.08999 * 108.87788 * 318.19504 * 4 2 1 24 24 H 1.08997 * 109.62740 * 334.43647 * 5 4 2 25 25 H 1.09000 * 109.78622 * 213.95632 * 5 4 2 26 26 H 1.09002 * 108.89568 * 159.25844 * 6 5 4 27 27 H 1.09001 * 108.81501 * 40.71350 * 6 5 4 28 28 H 1.09002 * 108.89439 * 301.18063 * 7 6 5 29 29 H 1.09000 * 108.89479 * 182.68662 * 7 6 5 30 30 H 1.09000 * 109.63052 * 39.72168 * 8 7 6 31 31 H 1.09003 * 109.63085 * 160.10643 * 8 7 6 32 32 H 0.96996 * 120.00400 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8810 1.0320 0.0000 4 6 2.0268 -0.6937 -1.2829 5 6 3.4681 -1.1157 -1.1880 6 6 3.5190 -2.5835 -0.7171 7 6 3.3394 -2.7111 0.7215 8 6 1.9648 -2.1921 1.1907 9 6 2.0236 -0.6916 1.2875 10 1 3.0546 -0.3903 1.4725 11 6 1.1721 -0.2441 2.4475 12 1 0.2860 0.3474 2.2705 13 6 1.5243 -0.5899 3.7349 14 7 2.6030 -1.3106 3.9506 15 14 0.4684 -0.0359 5.1729 16 1 -0.5711 -1.0601 5.4473 17 1 1.3219 0.1378 6.3757 18 1 -0.1848 1.2553 4.8388 19 1 -0.3633 -1.0151 0.1606 20 1 -0.3633 0.6466 0.7988 21 1 -0.3633 0.3684 -0.9593 22 1 1.9150 -0.0064 -2.1214 23 1 1.4128 -1.5752 -1.4675 24 1 3.9884 -0.4824 -0.4696 25 1 3.9433 -1.0278 -2.1651 26 1 4.4844 -3.0089 -0.9915 27 1 2.7311 -3.1423 -1.2222 28 1 4.1218 -2.1446 1.2265 29 1 3.4329 -3.7616 0.9970 30 1 1.1988 -2.4829 0.4719 31 1 1.7286 -2.6131 2.1680 32 1 2.8506 -1.5541 4.8563 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060247705.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = -45.312530 kcal Electronic energy + Delta-G solvation = -11830.871492 eV Core-core repulsion = 9982.520728 eV Total energy + Delta-G solvation = -1848.350764 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90264 -35.29970 -34.19415 -32.16742 -28.45539 -27.26819 -24.20883 -23.74788 -21.12834 -19.52313 -18.11252 -16.86635 -15.95406 -15.52801 -15.26963 -14.45959 -14.19911 -14.02099 -13.50179 -13.03299 -12.83355 -12.59816 -12.51271 -12.38190 -12.14976 -11.88536 -11.37270 -11.20576 -11.04681 -10.75833 -10.61318 -10.32444 -10.20248 -8.01870 -6.11085 1.40570 1.41842 1.50762 2.47232 3.27699 3.93926 4.12271 4.23925 4.45691 4.59297 4.64253 4.73040 4.80423 4.91684 5.04874 5.12649 5.19680 5.20587 5.36998 5.43134 5.43995 5.53109 5.64392 5.65911 5.69769 5.83135 5.87543 6.10970 6.31212 6.54724 7.05771 7.55616 9.04721 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.050698 B = 0.015020 C = 0.012469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.155899 B = 1863.783948 C = 2245.113526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.038 0.962 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.106 4.106 7 C -0.106 4.106 8 C -0.079 4.079 9 C 0.054 3.946 10 H -0.011 1.011 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.007 3.993 14 N -0.917 5.917 15 Si 0.943 3.057 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.269 1.269 19 H 0.041 0.959 20 H 0.043 0.957 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.032 0.968 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -0.617 -8.854 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.103 4.103 3 H 0.056 0.944 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.144 4.144 8 C -0.117 4.117 9 C 0.035 3.965 10 H 0.007 0.993 11 C -0.566 4.566 12 H 0.080 0.920 13 C -0.190 4.190 14 N -0.558 5.558 15 Si 0.770 3.230 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.194 1.194 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.721 -0.687 -8.712 8.769 hybrid contribution -0.292 0.236 1.459 1.507 sum -1.013 -0.451 -7.253 7.337 Atomic orbital electron populations 1.21742 0.95738 1.00900 0.99928 1.21565 0.95862 0.97935 0.94896 0.94377 1.21357 0.96128 1.00236 0.96495 1.21300 0.97027 0.95990 1.00772 1.20446 1.01617 0.96959 0.95337 1.20333 0.98182 0.99012 0.96826 1.21094 0.94568 0.97958 0.98095 1.18465 0.94313 0.92279 0.91396 0.99310 1.21980 1.10364 1.32207 0.92036 0.91962 1.25709 0.96269 0.95800 1.01264 1.70122 1.25837 1.39079 1.20723 0.85782 0.78900 0.78800 0.79508 1.20445 1.21472 1.19373 0.93943 0.93826 0.92576 0.91529 0.92220 0.93955 0.90181 0.91816 0.91772 0.95214 0.94150 0.94209 0.94906 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.19 71.98 0.59 -4.18 16 2 C -0.08 -3.42 2.51 -10.01 -0.03 -3.44 16 3 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.10 -3.43 4.65 30.14 0.14 -3.29 16 5 C -0.11 -3.64 5.61 30.20 0.17 -3.47 16 6 C -0.11 -3.48 5.26 28.73 0.15 -3.33 16 7 C -0.11 -4.40 5.26 28.74 0.15 -4.25 16 8 C -0.08 -3.76 4.64 30.20 0.14 -3.62 16 9 C 0.05 2.69 1.30 -11.93 -0.02 2.67 16 10 H -0.01 -0.64 6.64 -2.39 -0.02 -0.66 16 11 C -0.53 -29.08 7.80 25.60 0.20 -28.88 16 12 H 0.06 3.34 5.34 -2.91 -0.02 3.33 16 13 C 0.01 0.42 5.02 84.66 0.43 0.84 16 14 N -0.92 -54.35 12.04 21.45 0.26 -54.09 16 15 Si 0.94 44.63 29.54 68.60 2.03 46.66 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H 0.04 1.64 7.28 -2.39 -0.02 1.62 16 20 H 0.04 1.77 6.04 -2.39 -0.01 1.75 16 21 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.06 1.89 6.47 -2.39 -0.02 1.88 16 24 H 0.04 1.56 6.99 -2.39 -0.02 1.55 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.93 7.46 -2.39 -0.02 1.91 16 28 H 0.03 1.38 7.48 -2.39 -0.02 1.36 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.73 6.20 -2.39 -0.01 1.72 16 31 H 0.03 1.79 6.38 -2.39 -0.02 1.78 16 32 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -59.83 236.53 5.28 -54.54 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.07 Total: 3.84 kcal Atomic # 6 Polarization: -52.87 SS G_CDS: 1.93 Total: -50.95 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.26 Total: -54.09 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.83 5.28 -54.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247705.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.231 kcal (2) G-P(sol) polarization free energy of solvation -59.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds