Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 108.76776 * 2 1 4 4 C 1.50472 * 108.88070 * 118.51339 * 2 1 3 5 5 C 1.54235 * 108.52218 * 214.92888 * 4 2 1 6 6 C 1.45545 * 112.40665 * 280.00829 * 5 4 2 7 7 C 1.54237 * 112.40238 * 61.93651 * 6 5 4 8 8 C 1.50479 * 108.52365 * 280.01274 * 7 6 5 9 9 C 1.54066 * 108.87142 * 241.49161 * 2 1 3 10 10 H 1.08991 * 108.82041 * 76.75478 * 9 2 1 11 11 C 1.50697 * 108.81620 * 318.36227 * 9 2 1 12 12 H 1.08004 * 120.00035 * 305.25908 * 11 9 2 13 13 C 1.37873 * 120.00169 * 125.25961 * 11 9 2 14 14 N 1.31512 * 120.00105 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00296 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47196 * 59.99902 * 15 13 11 17 17 H 1.48500 * 109.47500 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47093 * 299.99945 * 15 13 11 19 19 H 1.09000 * 109.46528 * 307.22531 * 1 2 3 20 20 H 1.08997 * 109.47320 * 67.22187 * 1 2 3 21 21 H 1.09004 * 109.46987 * 187.22856 * 1 2 3 22 22 H 1.08999 * 109.62790 * 95.21516 * 4 2 1 23 23 H 1.09003 * 109.62420 * 334.63932 * 4 2 1 24 24 H 1.09000 * 108.89507 * 40.76522 * 5 4 2 25 25 H 1.09003 * 108.89464 * 159.25629 * 5 4 2 26 26 H 1.08997 * 108.89635 * 182.69309 * 6 5 4 27 27 H 1.09003 * 108.89260 * 301.18781 * 6 5 4 28 28 H 1.08999 * 109.63150 * 160.30511 * 7 6 5 29 29 H 1.09003 * 109.63072 * 39.72610 * 7 6 5 30 30 H 1.08995 * 108.87352 * 333.37685 * 8 7 6 31 31 H 1.09003 * 108.87549 * 214.92774 * 8 7 6 32 32 H 0.96997 * 120.00661 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0170 -0.6796 1.2511 5 6 3.3100 0.0200 1.7172 6 6 4.4789 -0.4188 0.9692 7 6 4.3714 -0.0917 -0.5343 8 6 3.5032 -1.1320 -1.1889 9 6 2.0284 -0.6958 -1.2811 10 1 1.9184 -0.0087 -2.1199 11 6 1.1768 -1.9127 -1.5359 12 1 1.0634 -2.6630 -0.7673 13 6 0.5426 -2.0684 -2.7501 14 7 0.6811 -1.1551 -3.6862 15 14 -0.5136 -3.5765 -3.0658 16 1 -1.6189 -3.6229 -2.0751 17 1 -1.0797 -3.5063 -4.4368 18 1 0.3187 -4.7995 -2.9365 19 1 -0.3632 0.6217 0.8183 20 1 -0.3634 0.3979 -0.9475 21 1 -0.3633 -1.0195 0.1293 22 1 2.2238 -1.7290 1.0409 23 1 1.2576 -0.6019 2.0292 24 1 3.1940 1.0965 1.5913 25 1 3.4663 -0.1950 2.7743 26 1 5.3629 0.0730 1.3751 27 1 4.5904 -1.4964 1.0889 28 1 5.3640 -0.1074 -0.9843 29 1 3.9232 0.8934 -0.6637 30 1 3.5627 -2.0548 -0.6120 31 1 3.8782 -1.3222 -2.1946 32 1 0.2346 -1.2643 -4.5404 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060247714.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -35.946697 kcal Electronic energy + Delta-G solvation = -11775.415163 eV Core-core repulsion = 9927.470532 eV Total energy + Delta-G solvation = -1847.944631 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.27366 -33.58077 -32.08481 -30.78153 -26.57535 -25.43418 -22.61148 -21.74719 -19.85989 -17.90666 -15.93573 -14.92147 -14.36080 -14.14572 -13.39820 -12.96433 -12.23880 -12.04909 -11.79509 -11.75317 -11.15134 -10.88339 -10.82493 -10.50753 -10.19007 -10.08221 -10.01813 -9.70094 -9.42500 -9.09572 -8.56108 -8.53312 -8.34696 -5.91831 -3.91235 3.35337 3.40379 3.42908 4.50219 5.31631 5.40017 5.42308 5.71447 5.98850 6.14524 6.24552 6.30899 6.32984 6.35974 6.59752 6.64418 6.76040 6.85950 6.92817 6.98926 7.04755 7.06700 7.29724 7.34068 7.47657 7.56556 7.89212 7.97166 8.08565 8.59986 9.18934 9.68905 11.17445 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.052156 B = 0.013962 C = 0.012819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.719277 B = 2005.001958 C = 2183.814444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 H 0.034 0.966 4 C -0.105 4.105 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.105 4.105 9 C 0.035 3.965 10 H 0.062 0.938 11 C -0.496 4.496 12 H 0.049 0.951 13 C 0.062 3.938 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 H 0.016 0.984 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 1.678 6.964 8.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.096 4.096 3 H 0.052 0.948 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.143 4.143 9 C 0.016 3.984 10 H 0.080 0.920 11 C -0.535 4.535 12 H 0.068 0.932 13 C -0.138 4.138 14 N -0.538 5.538 15 Si 0.711 3.289 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 H 0.035 0.965 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.515 1.716 6.766 7.815 hybrid contribution -0.607 -0.884 -0.284 1.109 sum 2.907 0.832 6.482 7.153 Atomic orbital electron populations 1.21667 0.96328 1.00735 0.98954 1.20982 0.95300 0.97183 0.96157 0.94799 1.21375 0.95015 1.00611 0.97283 1.20473 0.96246 1.00187 0.98213 1.20451 0.97189 1.00814 0.96461 1.21425 0.98879 1.00737 0.94373 1.21482 0.97624 0.96755 0.98438 1.19369 0.89629 0.96444 0.92962 0.91960 1.21044 1.28018 1.05761 0.98628 0.93230 1.24935 0.96501 0.95902 0.96476 1.69880 1.44369 1.34172 1.05393 0.86805 0.80951 0.83934 0.77172 1.20349 1.21481 1.20416 0.96492 0.93196 0.92448 0.91566 0.93689 0.92986 0.93837 0.93951 0.92711 0.93839 0.92369 0.93853 0.94046 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.02 37.16 0.30 -2.28 16 2 C -0.08 -1.65 1.98 -91.32 -0.18 -1.83 16 3 H 0.03 0.70 6.63 -51.93 -0.34 0.36 16 4 C -0.11 -1.98 5.08 -27.35 -0.14 -2.12 16 5 C -0.11 -1.85 5.26 -29.60 -0.16 -2.01 16 6 C -0.11 -1.82 5.26 -29.60 -0.16 -1.97 16 7 C -0.12 -2.14 5.61 -27.34 -0.15 -2.29 16 8 C -0.10 -2.31 4.67 -27.43 -0.13 -2.44 16 9 C 0.03 0.85 2.23 -90.66 -0.20 0.65 16 10 H 0.06 1.74 6.89 -51.93 -0.36 1.38 16 11 C -0.50 -13.33 5.93 -34.44 -0.20 -13.53 16 12 H 0.05 1.33 7.64 -52.48 -0.40 0.93 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.90 -26.22 12.59 55.43 0.70 -25.52 16 15 Si 0.88 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 20 H 0.05 1.17 8.12 -51.93 -0.42 0.74 16 21 H 0.06 1.29 7.19 -51.93 -0.37 0.92 16 22 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 23 H 0.04 0.79 7.71 -51.93 -0.40 0.39 16 24 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.90 7.47 -51.93 -0.39 0.51 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.09 6.98 -51.93 -0.36 0.73 16 30 H 0.04 0.95 6.46 -51.93 -0.34 0.62 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 241.14 15.07 3.63 3.63 Total: -1.00 -27.61 241.14 -7.17 -34.78 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.36 Total: -3.17 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -1.12 Total: -26.19 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.70 Total: -25.52 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.61 -7.17 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060247714.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.167 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds