Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48493 * 109.46857 * 264.98915 * 3 2 1 5 5 H 1.48501 * 109.46875 * 24.99176 * 3 2 1 6 6 H 1.48499 * 109.47014 * 144.98838 * 3 2 1 7 7 C 1.37875 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00059 * 189.70237 * 7 2 1 9 9 C 1.50701 * 119.99992 * 9.71058 * 7 2 1 10 10 H 1.09001 * 109.46702 * 305.39167 * 9 7 2 11 11 N 1.46894 * 109.47395 * 65.39132 * 9 7 2 12 12 C 1.50698 * 109.47101 * 185.39456 * 9 7 2 13 13 C 1.33384 * 125.20561 * 99.99802 * 12 9 7 14 14 C 1.38424 * 114.92509 * 179.97438 * 13 12 9 15 15 C 1.33392 * 114.91556 * 0.02562 * 14 13 12 16 16 S 1.75875 * 109.59616 * 359.75488 * 15 14 13 17 17 H 0.97008 * 119.99480 * 0.02562 * 1 2 3 18 18 H 1.00903 * 110.99920 * 297.99020 * 11 9 7 19 19 H 1.00900 * 111.00525 * 61.94079 * 11 9 7 20 20 H 1.07998 * 122.53890 * 359.97438 * 13 12 9 21 21 H 1.07997 * 122.54606 * 180.02562 * 14 13 12 22 22 H 1.08000 * 125.19914 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4898 1.4731 0.8033 7 6 2.0045 -1.1941 0.0005 8 1 3.0729 -1.2007 0.1582 9 6 1.2671 -2.4899 -0.2190 10 1 0.4553 -2.5728 0.5035 11 7 0.7156 -2.5149 -1.5803 12 6 2.2180 -3.6453 -0.0409 13 6 2.3200 -4.3950 1.0576 14 6 3.2659 -5.4034 0.9899 15 6 3.9325 -5.4721 -0.1634 16 16 3.3586 -4.2158 -1.2522 17 1 -0.4850 0.8402 -0.0004 18 1 0.0497 -1.7688 -1.7144 19 1 1.4513 -2.4712 -2.2694 20 1 1.7107 -4.2280 1.9335 21 1 3.4503 -6.0829 1.8088 22 1 4.7040 -6.1917 -0.3947 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495441.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = 22.107266 kcal Electronic energy + Delta-G solvation = -8881.750988 eV Core-core repulsion = 7141.984537 eV Total energy + Delta-G solvation = -1739.766452 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.17367 -34.53472 -31.48245 -28.46403 -25.81874 -23.49210 -21.09127 -18.51086 -16.68473 -16.17588 -15.02645 -14.48867 -13.73642 -13.04679 -12.51279 -12.14217 -11.76540 -11.41818 -11.15983 -10.91215 -10.87750 -10.15952 -10.12833 -9.67981 -8.66248 -7.90309 -7.72071 -7.29479 -6.16909 -4.30391 1.85624 2.44117 2.85576 3.20697 3.27766 3.31293 3.54852 4.30182 5.07566 5.61859 5.79209 6.22687 6.31330 6.54675 6.82879 7.05250 7.21319 7.55502 7.69592 8.00169 8.55613 8.74996 8.92252 9.38045 10.83181 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061586 B = 0.012813 C = 0.012449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.536861 B = 2184.816948 C = 2248.572604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.264 3.736 10 H 0.066 0.934 11 N -0.847 5.847 12 C -0.082 4.082 13 C -0.190 4.190 14 C -0.120 4.120 15 C -0.259 4.259 16 S 0.080 5.920 17 H 0.266 0.734 18 H 0.350 0.650 19 H 0.312 0.688 20 H 0.132 0.868 21 H 0.126 0.874 22 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -5.745 -0.816 7.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.152 3.848 10 H 0.083 0.917 11 N -0.375 5.375 12 C -0.200 4.200 13 C -0.219 4.219 14 C -0.152 4.152 15 C -0.394 4.394 16 S 0.342 5.658 17 H 0.076 0.924 18 H 0.164 0.836 19 H 0.122 0.878 20 H 0.150 0.850 21 H 0.144 0.856 22 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.655 -5.938 -2.065 7.823 hybrid contribution 0.631 1.453 1.488 2.174 sum 5.286 -4.485 -0.577 6.957 Atomic orbital electron populations 1.69919 1.05869 1.27384 1.49253 1.25017 0.94900 0.99372 0.94090 0.86537 0.79914 0.82755 0.78451 1.20378 1.21083 1.19781 1.21770 0.94883 0.90986 1.51362 0.92341 1.17694 0.90795 0.86802 0.89492 0.91679 1.59538 1.19647 1.53845 1.04518 1.25287 0.99587 0.99967 0.95155 1.19967 1.03492 0.98368 1.00038 1.20038 0.97591 0.99788 0.97796 1.25353 1.08521 1.06267 0.99262 1.83973 1.34875 1.27379 1.19557 0.92396 0.83619 0.87825 0.85048 0.85584 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 12.30 55.43 0.68 -23.73 14 2 C 0.07 1.88 5.27 -17.82 -0.09 1.79 14 3 Si 0.90 20.86 29.55 -169.99 -5.02 15.84 14 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 14 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 14 7 C -0.55 -14.86 8.67 -34.44 -0.30 -15.16 14 8 H 0.06 1.61 7.76 -52.48 -0.41 1.21 14 9 C 0.26 6.65 3.02 -70.02 -0.21 6.43 14 10 H 0.07 1.81 8.07 -51.93 -0.42 1.39 14 11 N -0.85 -20.14 9.16 -6.65 -0.06 -20.20 14 12 C -0.08 -1.83 5.40 -36.01 -0.19 -2.02 14 13 C -0.19 -3.89 10.04 -41.21 -0.41 -4.30 14 14 C -0.12 -2.12 10.18 -41.21 -0.42 -2.54 14 15 C -0.26 -4.41 11.23 29.04 0.33 -4.09 14 16 S 0.08 1.54 22.47 -107.50 -2.42 -0.87 14 17 H 0.27 6.99 8.31 -40.82 -0.34 6.65 14 18 H 0.35 8.72 7.84 -39.29 -0.31 8.41 14 19 H 0.31 7.07 8.25 -39.29 -0.32 6.74 14 20 H 0.13 2.57 8.06 -52.49 -0.42 2.14 14 21 H 0.13 1.82 8.06 -52.49 -0.42 1.40 14 22 H 0.15 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 213.00 15.07 3.21 3.21 Total: -1.00 -27.43 213.00 -6.78 -34.21 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -1.86 Total: 11.44 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.31 Total: -19.88 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.62 Total: -43.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.42 Total: -0.87 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -27.43 -6.78 -34.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495441.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.315 kcal (2) G-P(sol) polarization free energy of solvation -27.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds