Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00058 * 2 1 4 4 H 1.48493 * 109.46857 * 264.98915 * 3 2 1 5 5 H 1.48501 * 109.46875 * 24.99176 * 3 2 1 6 6 H 1.48499 * 109.47014 * 144.98838 * 3 2 1 7 7 C 1.37875 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00059 * 189.70237 * 7 2 1 9 9 C 1.50701 * 119.99992 * 9.71058 * 7 2 1 10 10 H 1.09001 * 109.46702 * 305.39167 * 9 7 2 11 11 N 1.46894 * 109.47395 * 65.39132 * 9 7 2 12 12 C 1.50698 * 109.47101 * 185.39456 * 9 7 2 13 13 C 1.33384 * 125.20561 * 99.99802 * 12 9 7 14 14 C 1.38424 * 114.92509 * 179.97438 * 13 12 9 15 15 C 1.33392 * 114.91556 * 0.02562 * 14 13 12 16 16 S 1.75875 * 109.59616 * 359.75488 * 15 14 13 17 17 H 0.97008 * 119.99480 * 0.02562 * 1 2 3 18 18 H 1.00903 * 110.99920 * 297.99020 * 11 9 7 19 19 H 1.00900 * 111.00525 * 61.94079 * 11 9 7 20 20 H 1.07998 * 122.53890 * 359.97438 * 13 12 9 21 21 H 1.07997 * 122.54606 * 180.02562 * 14 13 12 22 22 H 1.08000 * 125.19914 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3977 2.6809 0.5915 6 1 3.4898 1.4731 0.8033 7 6 2.0045 -1.1941 0.0005 8 1 3.0729 -1.2007 0.1582 9 6 1.2671 -2.4899 -0.2190 10 1 0.4553 -2.5728 0.5035 11 7 0.7156 -2.5149 -1.5803 12 6 2.2180 -3.6453 -0.0409 13 6 2.3200 -4.3950 1.0576 14 6 3.2659 -5.4034 0.9899 15 6 3.9325 -5.4721 -0.1634 16 16 3.3586 -4.2158 -1.2522 17 1 -0.4850 0.8402 -0.0004 18 1 0.0497 -1.7688 -1.7144 19 1 1.4513 -2.4712 -2.2694 20 1 1.7107 -4.2280 1.9335 21 1 3.4503 -6.0829 1.8088 22 1 4.7040 -6.1917 -0.3947 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071495441.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = 3.795978 kcal Electronic energy + Delta-G solvation = -8882.545025 eV Core-core repulsion = 7141.984537 eV Total energy + Delta-G solvation = -1740.560489 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.73736 -36.40838 -33.47856 -30.09483 -27.79681 -25.14210 -22.85189 -20.04572 -18.68252 -17.85516 -16.71417 -16.32231 -15.40917 -14.95322 -14.21942 -13.83057 -13.31192 -13.14776 -12.99934 -12.71802 -12.63583 -12.05114 -11.87573 -11.39169 -10.71238 -9.56603 -9.20727 -9.18254 -8.19365 -6.42304 0.35215 0.94008 1.35200 1.36510 1.38227 1.47850 2.03574 2.35964 3.00371 4.14266 4.35769 4.59030 4.80476 4.87317 5.18950 5.41432 5.58872 5.69500 5.75962 6.01208 6.56581 6.70666 6.95658 7.29924 8.78095 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061586 B = 0.012813 C = 0.012449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.536861 B = 2184.816948 C = 2248.572604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.027 3.973 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.565 4.565 8 H 0.048 0.952 9 C 0.269 3.731 10 H 0.026 0.974 11 N -0.839 5.839 12 C -0.134 4.134 13 C -0.187 4.187 14 C -0.130 4.130 15 C -0.235 4.235 16 S 0.084 5.916 17 H 0.269 0.731 18 H 0.341 0.659 19 H 0.319 0.681 20 H 0.129 0.871 21 H 0.164 0.836 22 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 -6.516 -0.871 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.605 4.605 8 H 0.066 0.934 9 C 0.157 3.843 10 H 0.044 0.956 11 N -0.366 5.366 12 C -0.252 4.252 13 C -0.217 4.217 14 C -0.161 4.161 15 C -0.370 4.370 16 S 0.345 5.655 17 H 0.078 0.922 18 H 0.154 0.846 19 H 0.129 0.871 20 H 0.147 0.853 21 H 0.181 0.819 22 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 6.256 -6.719 -2.127 9.424 hybrid contribution 0.156 1.595 1.523 2.211 sum 6.412 -5.123 -0.604 8.229 Atomic orbital electron populations 1.70014 1.07042 1.28227 1.49659 1.25739 0.95661 1.02374 0.93632 0.85568 0.78546 0.78906 0.78631 1.19599 1.20564 1.19809 1.21955 0.94454 0.92378 1.51736 0.93409 1.17377 0.90159 0.87833 0.88891 0.95611 1.59482 1.19600 1.53174 1.04344 1.25042 1.01677 1.00936 0.97577 1.20275 1.03621 0.98542 0.99251 1.20295 0.96803 0.99617 0.99344 1.25863 1.08080 1.05136 0.97872 1.83844 1.34024 1.28299 1.19284 0.92186 0.84649 0.87056 0.85337 0.81895 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.96 12.30 21.45 0.26 -50.70 14 2 C 0.03 1.48 5.27 84.65 0.45 1.93 14 3 Si 0.96 42.83 29.55 68.60 2.03 44.85 14 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 14 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 14 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 14 7 C -0.57 -31.06 8.67 25.60 0.22 -30.84 14 8 H 0.05 2.67 7.76 -2.91 -0.02 2.65 14 9 C 0.27 13.93 3.02 43.42 0.13 14.06 14 10 H 0.03 1.51 8.07 -2.39 -0.02 1.49 14 11 N -0.84 -40.69 9.16 -174.96 -1.60 -42.29 14 12 C -0.13 -6.02 5.40 24.59 0.13 -5.89 14 13 C -0.19 -7.50 10.04 21.22 0.21 -7.29 14 14 C -0.13 -4.15 10.18 21.22 0.22 -3.94 14 15 C -0.23 -7.08 11.23 66.72 0.75 -6.33 14 16 S 0.08 3.08 22.47 -56.49 -1.27 1.81 14 17 H 0.27 14.22 8.31 -92.70 -0.77 13.45 14 18 H 0.34 17.43 7.84 -89.69 -0.70 16.73 14 19 H 0.32 14.59 8.25 -89.69 -0.74 13.85 14 20 H 0.13 5.06 8.06 -2.91 -0.02 5.03 14 21 H 0.16 3.97 8.06 -2.91 -0.02 3.95 14 22 H 0.19 4.19 8.06 -2.91 -0.02 4.16 14 Total: -1.00 -58.58 213.00 1.32 -57.25 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.21 Total: 27.37 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 2.11 Total: -38.29 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -1.34 Total: -92.99 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.27 Total: 1.81 kcal Total: -58.58 1.32 -57.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495441.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.049 kcal (2) G-P(sol) polarization free energy of solvation -58.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds