Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47063 * 2 1 4 4 N 1.30676 * 123.22867 * 269.97361 * 3 2 1 5 5 C 1.29518 * 117.63604 * 180.02562 * 4 3 2 6 6 S 1.70887 * 110.87448 * 359.72417 * 5 4 3 7 7 C 1.38586 * 123.22508 * 90.00091 * 3 2 1 8 8 C 1.40041 * 126.25636 * 359.97389 * 7 3 2 9 9 H 1.08007 * 119.99371 * 8.74826 * 8 7 3 10 10 C 1.40070 * 120.00690 * 188.74199 * 8 7 3 11 11 N 1.30855 * 120.00310 * 176.38300 * 10 8 7 12 12 Si 1.86803 * 119.99535 * 356.38087 * 10 8 7 13 13 H 1.48502 * 109.47232 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47246 * 300.00185 * 12 10 8 15 15 H 1.48503 * 109.47062 * 59.99992 * 12 10 8 16 16 H 1.09000 * 109.46764 * 179.97438 * 1 2 3 17 17 H 1.08993 * 109.47447 * 299.99840 * 1 2 3 18 18 H 1.09001 * 109.46811 * 60.00515 * 1 2 3 19 19 H 1.09004 * 109.47059 * 239.99844 * 2 1 3 20 20 H 1.08998 * 109.47362 * 119.99978 * 2 1 3 21 21 H 1.08001 * 124.56087 * 180.02562 * 5 4 3 22 22 H 0.96996 * 120.00015 * 356.45603 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2715 2.0957 -1.0931 5 6 2.7016 3.3109 -0.9669 6 16 2.8443 3.7382 0.6816 7 6 2.2854 2.1367 1.1593 8 6 2.1214 1.6741 2.4709 9 1 1.9034 0.6319 2.6525 10 6 2.2401 2.5627 3.5471 11 7 2.0171 2.1460 4.7673 12 14 2.7167 4.3426 3.2403 13 1 2.7744 5.0696 4.5339 14 1 4.0484 4.3926 2.5851 15 1 1.7067 4.9805 2.3580 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3634 0.5138 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 1.8933 -0.5139 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 2.9337 3.9675 -1.7923 22 1 1.7199 1.2358 4.9223 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082422347.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 1.526175 kcal Electronic energy + Delta-G solvation = -9061.833590 eV Core-core repulsion = 7321.174675 eV Total energy + Delta-G solvation = -1740.658915 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.91095 -34.25848 -32.27278 -29.60778 -25.38832 -22.69083 -22.02793 -19.10266 -17.48945 -16.33048 -15.04653 -13.88381 -13.55101 -13.24016 -12.88513 -12.62188 -12.16479 -11.58515 -11.16196 -10.89461 -10.56235 -10.25758 -9.91773 -9.78325 -9.33485 -8.18719 -8.00800 -7.59741 -7.29440 -4.68905 2.33549 2.64518 3.05011 3.14415 3.19077 3.82939 3.84148 4.19290 4.84775 5.78123 6.01217 6.19887 6.33496 6.59262 6.72448 6.83031 7.02051 7.10615 7.17862 7.40911 7.80563 8.08107 8.21685 9.54867 9.62540 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.022492 C = 0.015458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.824483 B = 1244.573608 C = 1810.966855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.005 4.005 3 C -0.154 4.154 4 N -0.413 5.413 5 C -0.162 4.162 6 S -0.062 6.062 7 C 0.020 3.980 8 C -0.417 4.417 9 H 0.100 0.900 10 C 0.048 3.952 11 N -0.789 5.789 12 Si 0.939 3.061 13 H -0.235 1.235 14 H -0.209 1.209 15 H -0.210 1.210 16 H 0.039 0.961 17 H 0.051 0.949 18 H 0.046 0.954 19 H 0.050 0.950 20 H 0.056 0.944 21 H 0.156 0.844 22 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 1.508 -1.318 2.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.287 4.287 4 N -0.123 5.123 5 C -0.450 4.450 6 S 0.183 5.817 7 C -0.102 4.102 8 C -0.455 4.455 9 H 0.118 0.882 10 C -0.177 4.177 11 N -0.410 5.410 12 Si 0.761 3.239 13 H -0.159 1.159 14 H -0.135 1.135 15 H -0.135 1.135 16 H 0.058 0.942 17 H 0.070 0.930 18 H 0.065 0.935 19 H 0.068 0.932 20 H 0.074 0.926 21 H 0.173 0.827 22 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.465 3.611 -0.685 3.705 hybrid contribution -0.618 -2.299 -0.720 2.487 sum -0.153 1.312 -1.405 1.929 Atomic orbital electron populations 1.21714 0.97043 0.99418 1.01530 1.19368 0.94040 0.91095 1.00001 1.19803 1.23788 0.99347 0.85802 1.65011 1.08613 1.05578 1.33099 1.26605 1.23225 0.97460 0.97691 1.83912 1.70870 1.18899 1.08005 1.23091 0.97223 0.91806 0.98043 1.20326 1.36842 0.98675 0.89640 0.88241 1.27461 0.91763 1.06916 0.91565 1.70567 1.27309 1.21295 1.21834 0.84403 0.83746 0.74161 0.81612 1.15864 1.13501 1.13520 0.94212 0.92960 0.93490 0.93153 0.92575 0.82684 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 37.16 0.37 -2.36 14 2 C 0.00 -0.11 6.14 -27.88 -0.17 -0.28 14 3 C -0.15 -3.93 6.15 -82.96 -0.51 -4.44 14 4 N -0.41 -10.63 10.48 -10.90 -0.11 -10.75 14 5 C -0.16 -3.89 12.19 51.79 0.63 -3.26 14 6 S -0.06 -1.48 15.53 -107.50 -1.67 -3.15 14 7 C 0.02 0.52 6.07 -38.78 -0.24 0.29 14 8 C -0.42 -10.69 9.38 -38.22 -0.36 -11.04 14 9 H 0.10 2.55 7.10 -52.48 -0.37 2.18 14 10 C 0.05 1.17 5.52 -17.28 -0.10 1.08 14 11 N -0.79 -19.60 13.66 55.56 0.76 -18.84 14 12 Si 0.94 19.97 24.55 -169.99 -4.17 15.80 14 13 H -0.23 -4.72 7.11 56.52 0.40 -4.32 14 14 H -0.21 -4.31 6.31 58.77 0.37 -3.94 14 15 H -0.21 -4.39 6.40 57.00 0.37 -4.03 14 16 H 0.04 0.65 8.14 -51.93 -0.42 0.23 14 17 H 0.05 1.07 8.14 -51.93 -0.42 0.65 14 18 H 0.05 0.93 8.14 -51.93 -0.42 0.50 14 19 H 0.05 1.05 8.14 -51.93 -0.42 0.63 14 20 H 0.06 1.20 7.08 -51.93 -0.37 0.83 14 21 H 0.16 3.26 8.06 -52.49 -0.42 2.84 14 22 H 0.29 6.97 8.72 -40.82 -0.36 6.61 14 LS Contribution 202.91 15.07 3.06 3.06 Total: -1.00 -27.14 202.91 -4.59 -31.73 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -2.07 Total: 2.18 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.37 Total: -20.02 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.64 Total: -29.59 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.67 Total: -3.15 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -27.14 -4.59 -31.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422347.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.254 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds