Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47063 * 2 1 4 4 N 1.30676 * 123.22867 * 269.97361 * 3 2 1 5 5 C 1.29518 * 117.63604 * 180.02562 * 4 3 2 6 6 S 1.70887 * 110.87448 * 359.72417 * 5 4 3 7 7 C 1.38586 * 123.22508 * 90.00091 * 3 2 1 8 8 C 1.40041 * 126.25636 * 359.97389 * 7 3 2 9 9 H 1.08007 * 119.99371 * 8.74826 * 8 7 3 10 10 C 1.40070 * 120.00690 * 188.74199 * 8 7 3 11 11 N 1.30855 * 120.00310 * 176.38300 * 10 8 7 12 12 Si 1.86803 * 119.99535 * 356.38087 * 10 8 7 13 13 H 1.48502 * 109.47232 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47246 * 300.00185 * 12 10 8 15 15 H 1.48503 * 109.47062 * 59.99992 * 12 10 8 16 16 H 1.09000 * 109.46764 * 179.97438 * 1 2 3 17 17 H 1.08993 * 109.47447 * 299.99840 * 1 2 3 18 18 H 1.09001 * 109.46811 * 60.00515 * 1 2 3 19 19 H 1.09004 * 109.47059 * 239.99844 * 2 1 3 20 20 H 1.08998 * 109.47362 * 119.99978 * 2 1 3 21 21 H 1.08001 * 124.56087 * 180.02562 * 5 4 3 22 22 H 0.96996 * 120.00015 * 356.45603 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2715 2.0957 -1.0931 5 6 2.7016 3.3109 -0.9669 6 16 2.8443 3.7382 0.6816 7 6 2.2854 2.1367 1.1593 8 6 2.1214 1.6741 2.4709 9 1 1.9034 0.6319 2.6525 10 6 2.2401 2.5627 3.5471 11 7 2.0171 2.1460 4.7673 12 14 2.7167 4.3426 3.2403 13 1 2.7744 5.0696 4.5339 14 1 4.0484 4.3926 2.5851 15 1 1.7067 4.9805 2.3580 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3634 0.5138 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 1.8933 -0.5139 -0.8900 20 1 1.8934 -0.5138 0.8900 21 1 2.9337 3.9675 -1.7923 22 1 1.7199 1.2358 4.9223 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082422347.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = -15.775457 kcal Electronic energy + Delta-G solvation = -9062.583845 eV Core-core repulsion = 7321.174675 eV Total energy + Delta-G solvation = -1741.409170 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.82158 -36.14285 -34.01843 -31.47708 -27.22309 -24.60058 -23.77504 -20.99487 -19.37762 -18.21470 -16.85146 -15.63519 -15.40736 -15.10628 -14.64084 -14.35710 -13.98565 -13.31383 -12.89732 -12.65122 -12.22501 -11.99733 -11.72229 -11.59409 -11.16849 -10.12691 -9.89884 -9.50179 -9.16416 -6.62600 0.41914 0.87351 1.15689 1.43104 1.46705 2.02276 2.13475 2.29680 2.92756 4.01752 4.34794 4.53289 4.66764 4.88194 5.00379 5.10293 5.18831 5.32795 5.42256 5.50344 5.85912 6.17302 6.32981 7.61956 7.72861 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.042233 B = 0.022492 C = 0.015458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.824483 B = 1244.573608 C = 1810.966855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.008 4.008 3 C -0.171 4.171 4 N -0.436 5.436 5 C -0.160 4.160 6 S -0.030 6.030 7 C -0.009 4.009 8 C -0.438 4.438 9 H 0.084 0.916 10 C 0.021 3.979 11 N -0.803 5.803 12 Si 0.955 3.045 13 H -0.213 1.213 14 H -0.198 1.198 15 H -0.203 1.203 16 H 0.072 0.928 17 H 0.035 0.965 18 H 0.042 0.958 19 H 0.058 0.942 20 H 0.053 0.947 21 H 0.186 0.814 22 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 2.414 -1.947 3.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.048 4.048 3 C -0.304 4.304 4 N -0.147 5.147 5 C -0.448 4.448 6 S 0.216 5.784 7 C -0.130 4.130 8 C -0.475 4.475 9 H 0.102 0.898 10 C -0.199 4.199 11 N -0.425 5.425 12 Si 0.772 3.228 13 H -0.135 1.135 14 H -0.123 1.123 15 H -0.128 1.128 16 H 0.091 0.909 17 H 0.054 0.946 18 H 0.062 0.938 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.203 0.797 22 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.619 4.491 -1.296 4.715 hybrid contribution -0.648 -2.578 -0.617 2.729 sum -0.029 1.912 -1.912 2.705 Atomic orbital electron populations 1.21606 0.95287 1.01325 1.00470 1.19465 0.95570 0.89560 1.00234 1.20378 1.23475 1.00722 0.85779 1.65122 1.09869 1.06407 1.33328 1.27330 1.20923 0.97380 0.99189 1.83758 1.70006 1.17283 1.07344 1.23333 0.98092 0.93358 0.98248 1.20302 1.38548 0.98393 0.90277 0.89765 1.28375 0.91238 1.09264 0.91072 1.70609 1.28434 1.21363 1.22098 0.84264 0.84093 0.71470 0.82976 1.13529 1.12303 1.12808 0.90863 0.94568 0.93839 0.92287 0.92845 0.79680 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.89 71.98 0.71 -4.19 14 2 C -0.01 -0.36 6.14 29.85 0.18 -0.18 14 3 C -0.17 -8.58 6.15 42.81 0.26 -8.32 14 4 N -0.44 -21.74 10.48 -188.39 -1.97 -23.71 14 5 C -0.16 -7.25 12.19 130.58 1.59 -5.66 14 6 S -0.03 -1.35 15.53 -56.49 -0.88 -2.23 14 7 C -0.01 -0.43 6.07 22.79 0.14 -0.29 14 8 C -0.44 -22.55 9.38 23.15 0.22 -22.33 14 9 H 0.08 4.45 7.10 -2.91 -0.02 4.43 14 10 C 0.02 1.05 5.52 85.28 0.47 1.52 14 11 N -0.80 -39.86 13.66 21.86 0.30 -39.56 14 12 Si 0.95 38.39 24.55 68.60 1.68 40.08 14 13 H -0.21 -7.84 7.11 99.48 0.71 -7.14 14 14 H -0.20 -7.57 6.31 98.05 0.62 -6.95 14 15 H -0.20 -7.94 6.40 99.18 0.64 -7.31 14 16 H 0.07 2.26 8.14 -2.39 -0.02 2.24 14 17 H 0.04 1.46 8.14 -2.39 -0.02 1.44 14 18 H 0.04 1.65 8.14 -2.39 -0.02 1.63 14 19 H 0.06 2.39 8.14 -2.39 -0.02 2.37 14 20 H 0.05 2.29 7.08 -2.39 -0.02 2.27 14 21 H 0.19 7.10 8.06 -2.91 -0.02 7.07 14 22 H 0.29 14.01 8.72 -92.71 -0.81 13.20 14 Total: -1.00 -55.35 202.91 3.72 -51.63 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.01 Total: 13.26 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 3.58 Total: -39.46 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -1.67 Total: -63.28 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.68 Total: 40.08 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -0.88 Total: -2.23 kcal Total: -55.35 3.72 -51.63 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082422347.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.853 kcal (2) G-P(sol) polarization free energy of solvation -55.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds