Wall clock time and date at job start Mon Mar 30 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47096 * 2 1 4 4 N 1.29526 * 124.56162 * 90.26409 * 3 2 1 5 5 C 1.30681 * 117.63200 * 180.20276 * 4 3 2 6 6 C 1.38580 * 113.54891 * 359.55208 * 5 4 3 7 7 C 1.40043 * 126.25611 * 180.25331 * 6 5 4 8 8 H 1.08003 * 119.99330 * 353.56643 * 7 6 5 9 9 C 1.40072 * 120.00346 * 173.57091 * 7 6 5 10 10 N 1.30857 * 120.00085 * 6.45390 * 9 7 6 11 11 Si 1.86804 * 120.00015 * 186.45125 * 9 7 6 12 12 H 1.48501 * 109.47083 * 94.98216 * 11 9 7 13 13 H 1.48494 * 109.47114 * 214.98777 * 11 9 7 14 14 H 1.48500 * 109.46924 * 334.98593 * 11 9 7 15 15 S 1.70884 * 124.56254 * 269.99936 * 3 2 1 16 16 H 1.09004 * 109.46800 * 299.99617 * 1 2 3 17 17 H 1.08994 * 109.47357 * 59.99514 * 1 2 3 18 18 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46800 * 240.00382 * 2 1 3 20 20 H 1.08994 * 109.47357 * 120.00486 * 2 1 3 21 21 H 1.07998 * 123.22366 * 179.82573 * 5 4 3 22 22 H 0.97000 * 119.99906 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2819 2.1119 1.0667 5 6 2.7098 3.3366 0.9090 6 6 2.8419 3.7103 -0.4189 7 6 3.2819 4.9537 -0.8895 8 1 3.4571 5.7624 -0.1954 9 6 3.4948 5.1485 -2.2602 10 7 3.1635 4.2131 -3.1132 11 14 4.2516 6.7436 -2.8705 12 1 5.7176 6.5673 -3.0284 13 1 3.6526 7.1064 -4.1799 14 1 3.9860 7.8251 -1.8880 15 16 2.3555 2.3347 -1.4072 16 1 -0.3633 0.5138 0.8901 17 1 -0.3634 0.5139 -0.8899 18 1 -0.3633 -1.0276 0.0005 19 1 1.8933 -0.5138 -0.8901 20 1 1.8934 -0.5139 0.8899 21 1 2.9425 3.9929 1.7345 22 1 3.3113 4.3478 -4.0623 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082688949.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:54 Heat of formation + Delta-G solvation = -16.338689 kcal Electronic energy + Delta-G solvation = -8800.795907 eV Core-core repulsion = 7059.362314 eV Total energy + Delta-G solvation = -1741.433593 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.37371 -36.21543 -34.20355 -31.08971 -27.28400 -25.13388 -23.05593 -20.64340 -19.29042 -17.51675 -17.03233 -15.45463 -15.07250 -14.94074 -14.30319 -13.99038 -13.64525 -13.21977 -13.00321 -12.71204 -12.24726 -12.01979 -11.79278 -11.51766 -11.33134 -9.81339 -9.71987 -9.15196 -8.86831 -6.56273 0.63490 1.36769 1.47557 1.52245 1.55552 1.95624 2.17014 2.36537 3.07133 4.04023 4.37845 4.61743 4.65244 4.91237 5.02314 5.15764 5.22087 5.28537 5.41808 5.78887 6.00157 6.37443 6.44248 7.79462 7.98508 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.087921 B = 0.012656 C = 0.011447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.392243 B = 2211.853997 C = 2445.509832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 C -0.182 4.182 4 N -0.457 5.457 5 C -0.215 4.215 6 C -0.033 4.033 7 C -0.399 4.399 8 H 0.105 0.895 9 C 0.012 3.988 10 N -0.796 5.796 11 Si 1.016 2.984 12 H -0.259 1.259 13 H -0.259 1.259 14 H -0.252 1.252 15 S 0.111 5.889 16 H 0.037 0.963 17 H 0.045 0.955 18 H 0.084 0.916 19 H 0.075 0.925 20 H 0.066 0.934 21 H 0.138 0.862 22 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -0.034 -3.525 3.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.057 4.057 3 C -0.453 4.453 4 N -0.170 5.170 5 C -0.367 4.367 6 C -0.156 4.156 7 C -0.435 4.435 8 H 0.123 0.877 9 C -0.207 4.207 10 N -0.422 5.422 11 Si 0.834 3.166 12 H -0.183 1.183 13 H -0.183 1.183 14 H -0.176 1.176 15 S 0.362 5.638 16 H 0.056 0.944 17 H 0.064 0.936 18 H 0.103 0.897 19 H 0.093 0.907 20 H 0.084 0.916 21 H 0.156 0.844 22 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.608 -0.717 -4.244 4.347 hybrid contribution 0.522 1.194 0.766 1.512 sum -0.086 0.477 -3.478 3.511 Atomic orbital electron populations 1.21671 0.94339 1.02155 1.00869 1.19711 0.96191 0.87994 1.01761 1.26748 1.20685 1.04068 0.93774 1.65210 1.10874 1.06690 1.34191 1.21542 1.25749 0.94848 0.94532 1.23677 0.98333 0.98539 0.95068 1.19588 1.33604 0.96085 0.94240 0.87712 1.27291 0.94137 1.03423 0.95881 1.69050 1.32607 1.34552 1.05968 0.84638 0.78611 0.74809 0.78550 1.18298 1.18266 1.17570 1.83712 1.65123 1.05766 1.09213 0.94420 0.93560 0.89744 0.90681 0.91581 0.84428 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.89 71.98 0.71 -3.78 14 2 C -0.02 -0.63 6.51 29.85 0.19 -0.43 14 3 C -0.18 -9.21 6.61 88.45 0.59 -8.63 14 4 N -0.46 -25.37 10.48 -188.22 -1.97 -27.35 14 5 C -0.21 -12.11 11.46 84.95 0.97 -11.14 14 6 C -0.03 -1.84 6.24 22.79 0.14 -1.70 14 7 C -0.40 -20.58 9.32 23.15 0.22 -20.36 14 8 H 0.11 5.06 7.86 -2.91 -0.02 5.04 14 9 C 0.01 0.56 5.49 85.28 0.47 1.03 14 10 N -0.80 -37.89 10.80 21.86 0.24 -37.65 14 11 Si 1.02 34.10 29.57 68.60 2.03 36.13 14 12 H -0.26 -8.41 7.11 99.48 0.71 -7.70 14 13 H -0.26 -8.10 7.11 99.48 0.71 -7.39 14 14 H -0.25 -8.23 7.11 99.48 0.71 -7.52 14 15 S 0.11 5.77 20.26 -56.49 -1.14 4.63 14 16 H 0.04 1.36 8.14 -2.38 -0.02 1.34 14 17 H 0.05 1.60 8.14 -2.39 -0.02 1.58 14 18 H 0.08 2.20 8.14 -2.39 -0.02 2.18 14 19 H 0.07 2.67 8.14 -2.38 -0.02 2.65 14 20 H 0.07 2.51 8.14 -2.39 -0.02 2.50 14 21 H 0.14 7.34 8.06 -2.91 -0.02 7.32 14 22 H 0.31 12.94 8.30 -92.71 -0.77 12.17 14 Total: -1.00 -60.74 212.88 3.65 -57.10 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.21 Total: 12.16 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 3.29 Total: -45.01 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -1.74 Total: -65.00 kcal Atomic # 14 Polarization: 34.10 SS G_CDS: 2.03 Total: 36.13 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -1.14 Total: 4.63 kcal Total: -60.74 3.65 -57.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082688949.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -60.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds