Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00408 * 3 2 1 5 5 H 1.48504 * 109.47157 * 30.00228 * 3 2 1 6 6 H 1.48501 * 109.47057 * 150.00030 * 3 2 1 7 7 C 1.37878 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46701 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.52447 * 56.10451 * 10 9 7 12 12 C 1.53714 * 110.46472 * 178.66201 * 10 9 7 13 13 N 1.46312 * 106.75882 * 118.48423 * 12 10 9 14 14 C 1.33877 * 111.43170 * 0.39223 * 13 12 10 15 15 O 1.21373 * 124.45465 * 179.86493 * 14 13 12 16 16 C 1.49001 * 111.09730 * 359.59655 * 14 13 12 17 17 O 1.20781 * 126.79708 * 180.24527 * 16 14 13 18 18 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.47025 * 59.99950 * 9 7 2 20 20 H 1.08998 * 109.46986 * 299.99553 * 9 7 2 21 21 H 1.08994 * 110.00196 * 238.03125 * 12 10 9 22 22 H 1.09003 * 109.99856 * 359.33656 * 12 10 9 23 23 H 0.97003 * 124.28864 * 180.23142 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9262 -3.5827 0.8468 12 6 1.5001 -5.0062 0.0331 13 7 1.8580 -5.7178 -1.1942 14 6 2.7070 -5.0038 -1.9437 15 8 3.1581 -5.3710 -3.0090 16 6 3.0202 -3.6963 -1.3015 17 8 3.7479 -2.8343 -1.7329 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 1.8090 -5.5820 0.9054 22 1 0.4239 -4.8353 0.0615 23 1 1.5244 -6.5967 -1.4333 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084248593.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -71.826413 kcal Electronic energy + Delta-G solvation = -10867.075332 eV Core-core repulsion = 8680.482739 eV Total energy + Delta-G solvation = -2186.592593 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.52301 -37.57134 -36.38115 -33.33061 -31.10376 -26.85146 -26.24784 -22.99790 -20.64829 -19.41212 -17.32808 -16.48257 -15.77986 -15.54990 -14.52352 -14.40324 -13.76141 -13.38451 -13.11982 -12.35556 -12.02124 -11.59127 -11.19287 -10.96504 -10.59767 -10.55176 -9.73485 -9.32393 -8.97984 -8.62507 -8.35857 -6.08226 -4.10351 1.55216 3.25013 3.33220 3.39331 3.43466 3.47179 4.42677 4.43493 4.99391 5.05286 5.30048 5.36877 5.81949 6.20157 6.45183 6.76053 6.98387 7.37675 7.41152 7.65966 7.90639 8.23159 8.33322 8.95850 9.55496 11.02979 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.062276 B = 0.012188 C = 0.010913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.507058 B = 2296.749115 C = 2565.239999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.039 3.961 10 C -0.150 4.150 11 H 0.114 0.886 12 C 0.101 3.899 13 N -0.707 5.707 14 C 0.469 3.531 15 O -0.517 6.517 16 C 0.359 3.641 17 O -0.370 6.370 18 H 0.262 0.738 19 H 0.023 0.977 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -9.201 2.613 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.002 3.998 10 C -0.170 4.170 11 H 0.132 0.868 12 C -0.023 4.023 13 N -0.365 5.365 14 C 0.252 3.748 15 O -0.393 6.393 16 C 0.225 3.775 17 O -0.235 6.235 18 H 0.071 0.929 19 H 0.041 0.959 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.105 0.895 23 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.573 -8.640 1.844 8.974 hybrid contribution 0.061 0.436 -0.039 0.442 sum 1.634 -8.205 1.805 8.559 Atomic orbital electron populations 1.69948 1.06069 1.26913 1.50641 1.24967 0.94829 0.99415 0.94933 0.86527 0.79829 0.83031 0.78290 1.20579 1.21280 1.19707 1.21227 0.93645 0.90327 1.50998 0.91646 1.19107 0.92495 0.89649 0.98578 1.22624 1.00298 0.96591 0.97463 0.86796 1.22170 1.01522 0.92496 0.86085 1.45595 1.46885 1.20875 1.23163 1.21502 0.79630 0.88752 0.84892 1.90742 1.53140 1.74507 1.20876 1.24234 0.79647 0.85129 0.88492 1.90406 1.27625 1.39025 1.66413 0.92865 0.95911 0.94428 0.90373 0.89497 0.74722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.29 55.43 0.74 -25.22 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 14 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 14 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 14 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 14 7 C -0.52 -14.21 8.33 -34.44 -0.29 -14.50 14 8 H 0.07 1.79 7.01 -52.49 -0.37 1.42 14 9 C 0.04 0.90 4.27 -27.88 -0.12 0.78 14 10 C -0.15 -2.68 3.04 -91.02 -0.28 -2.95 14 11 H 0.11 1.87 8.14 -51.93 -0.42 1.44 14 12 C 0.10 1.30 7.51 -3.77 -0.03 1.27 14 13 N -0.71 -9.49 6.19 -60.86 -0.38 -9.87 14 14 C 0.47 8.60 8.34 -12.20 -0.10 8.50 14 15 O -0.52 -11.08 18.03 3.22 0.06 -11.02 14 16 C 0.36 7.30 7.11 -29.47 -0.21 7.09 14 17 O -0.37 -8.85 16.69 3.72 0.06 -8.79 14 18 H 0.26 7.21 8.31 -40.82 -0.34 6.87 14 19 H 0.02 0.57 8.14 -51.93 -0.42 0.15 14 20 H 0.04 0.87 8.14 -51.93 -0.42 0.45 14 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 14 22 H 0.09 1.07 7.69 -51.93 -0.40 0.67 14 23 H 0.41 4.26 8.96 -40.82 -0.37 3.89 14 LS Contribution 213.65 15.07 3.22 3.22 Total: -1.00 -32.53 213.65 -4.40 -36.93 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -1.96 Total: -3.78 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.12 Total: 1.77 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.36 Total: -35.09 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.12 Total: -19.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -32.53 -4.40 -36.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084248593.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.899 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds