Wall clock time and date at job start Mon Mar 30 2020 02:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00408 * 3 2 1 5 5 H 1.48504 * 109.47157 * 30.00228 * 3 2 1 6 6 H 1.48501 * 109.47057 * 150.00030 * 3 2 1 7 7 C 1.37878 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46701 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.52447 * 56.10451 * 10 9 7 12 12 C 1.53714 * 110.46472 * 178.66201 * 10 9 7 13 13 N 1.46312 * 106.75882 * 118.48423 * 12 10 9 14 14 C 1.33877 * 111.43170 * 0.39223 * 13 12 10 15 15 O 1.21373 * 124.45465 * 179.86493 * 14 13 12 16 16 C 1.49001 * 111.09730 * 359.59655 * 14 13 12 17 17 O 1.20781 * 126.79708 * 180.24527 * 16 14 13 18 18 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 19 19 H 1.08991 * 109.47025 * 59.99950 * 9 7 2 20 20 H 1.08998 * 109.46986 * 299.99553 * 9 7 2 21 21 H 1.08994 * 110.00196 * 238.03125 * 12 10 9 22 22 H 1.09003 * 109.99856 * 359.33656 * 12 10 9 23 23 H 0.97003 * 124.28864 * 180.23142 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9262 -3.5827 0.8468 12 6 1.5001 -5.0062 0.0331 13 7 1.8580 -5.7178 -1.1942 14 6 2.7070 -5.0038 -1.9437 15 8 3.1581 -5.3710 -3.0090 16 6 3.0202 -3.6963 -1.3015 17 8 3.7479 -2.8343 -1.7329 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 1.8090 -5.5820 0.9054 22 1 0.4239 -4.8353 0.0615 23 1 1.5244 -6.5967 -1.4333 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084248593.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:23 Heat of formation + Delta-G solvation = -97.120967 kcal Electronic energy + Delta-G solvation = -10868.172186 eV Core-core repulsion = 8680.482739 eV Total energy + Delta-G solvation = -2187.689447 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.99705 -39.18451 -37.83745 -35.26996 -32.82950 -28.64614 -27.62932 -24.82965 -22.15844 -20.90940 -18.68775 -18.48682 -17.29652 -17.10501 -16.45251 -16.01292 -15.18948 -14.88182 -14.69179 -14.05859 -13.77607 -13.43640 -12.91447 -12.70854 -12.43431 -12.30696 -11.60407 -11.26533 -10.61178 -10.20514 -10.07897 -8.20835 -6.27300 -0.00180 1.38675 1.41571 1.50936 1.88913 2.03533 2.42010 3.06516 3.15501 3.57972 3.70517 4.19927 4.79646 4.82041 4.98229 5.43189 5.49588 5.55471 5.70736 5.79964 6.17519 6.23906 6.86782 7.00965 7.41290 8.90098 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.062276 B = 0.012188 C = 0.010913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.507058 B = 2296.749115 C = 2565.239999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.285 1.285 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.043 3.957 10 C -0.146 4.146 11 H 0.134 0.866 12 C 0.110 3.890 13 N -0.673 5.673 14 C 0.468 3.532 15 O -0.556 6.556 16 C 0.350 3.650 17 O -0.419 6.419 18 H 0.263 0.737 19 H -0.003 1.003 20 H 0.039 0.961 21 H 0.132 0.868 22 H 0.101 0.899 23 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.791 -10.432 3.844 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.005 3.995 10 C -0.165 4.165 11 H 0.152 0.848 12 C -0.013 4.013 13 N -0.331 5.331 14 C 0.251 3.749 15 O -0.436 6.436 16 C 0.218 3.782 17 O -0.287 6.287 18 H 0.072 0.928 19 H 0.015 0.985 20 H 0.057 0.943 21 H 0.150 0.850 22 H 0.119 0.881 23 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.313 -9.915 3.117 10.476 hybrid contribution 0.097 0.793 -0.384 0.887 sum 1.410 -9.122 2.733 9.626 Atomic orbital electron populations 1.70026 1.07136 1.27639 1.51907 1.25708 0.95643 1.02542 0.95070 0.85689 0.79091 0.79822 0.77938 1.21158 1.20228 1.18997 1.21646 0.93599 0.92340 1.49935 0.92536 1.18937 0.92987 0.90311 0.97237 1.22533 0.99520 0.97604 0.96864 0.84823 1.22296 1.01675 0.90134 0.87167 1.45459 1.44376 1.21050 1.22252 1.21174 0.80571 0.88387 0.84786 1.90729 1.55211 1.75060 1.22592 1.24912 0.78539 0.85368 0.89332 1.90374 1.29751 1.40874 1.67657 0.92778 0.98452 0.94280 0.85045 0.88071 0.72184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 13.29 21.45 0.28 -53.51 14 2 C 0.01 0.49 5.46 84.65 0.46 0.95 14 3 Si 0.95 44.73 29.54 68.60 2.03 46.76 14 4 H -0.29 -13.61 7.11 99.48 0.71 -12.91 14 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 14 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 14 7 C -0.54 -29.16 8.33 25.60 0.21 -28.94 14 8 H 0.06 3.11 7.01 -2.91 -0.02 3.09 14 9 C 0.04 1.94 4.27 29.85 0.13 2.06 14 10 C -0.15 -4.87 3.04 -11.05 -0.03 -4.91 14 11 H 0.13 3.98 8.14 -2.39 -0.02 3.96 14 12 C 0.11 2.32 7.51 86.66 0.65 2.97 14 13 N -0.67 -15.59 6.19 -465.32 -2.88 -18.47 14 14 C 0.47 16.49 8.34 87.27 0.73 17.22 14 15 O -0.56 -23.64 18.03 -1.16 -0.02 -23.66 14 16 C 0.35 14.02 7.11 28.82 0.20 14.23 14 17 O -0.42 -20.45 16.69 0.65 0.01 -20.44 14 18 H 0.26 14.52 8.31 -92.71 -0.77 13.75 14 19 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 14 20 H 0.04 1.76 8.14 -2.39 -0.02 1.74 14 21 H 0.13 1.62 8.14 -2.39 -0.02 1.60 14 22 H 0.10 2.01 7.69 -2.39 -0.02 1.99 14 23 H 0.43 7.07 8.96 -92.71 -0.83 6.24 14 Total: -1.00 -71.82 213.65 2.18 -69.65 By element: Atomic # 1 Polarization: -4.31 SS G_CDS: 0.40 Total: -3.91 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 2.35 Total: 3.58 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -2.60 Total: -71.98 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.01 Total: -44.10 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.82 2.18 -69.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084248593.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.472 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds