Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.41820 * 305.70117 * 10 9 7 12 12 C 1.53712 * 110.46259 * 183.21054 * 10 9 7 13 13 N 1.46315 * 106.75741 * 241.29849 * 12 10 9 14 14 C 1.33876 * 111.43484 * 359.97438 * 13 12 10 15 15 O 1.21363 * 124.45438 * 179.97438 * 14 13 12 16 16 C 1.49293 * 111.12810 * 359.93820 * 14 13 12 17 17 O 1.20781 * 126.94415 * 180.08579 * 16 14 13 18 18 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 20 20 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 21 21 H 1.09003 * 110.00354 * 0.61833 * 12 10 9 22 22 H 1.08997 * 110.00154 * 121.92965 * 12 10 9 23 23 H 0.97006 * 124.28671 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5860 -3.1939 0.8292 12 6 5.5563 -2.6639 0.0812 13 7 6.0316 -3.3208 -1.1368 14 6 5.0130 -3.6862 -1.9249 15 8 5.1387 -4.2487 -2.9930 16 6 3.7015 -3.3120 -1.3175 17 8 2.6041 -3.5073 -1.7825 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6796 -0.8894 20 1 3.8746 -0.6807 0.8905 21 1 5.9452 -1.6469 0.1322 22 1 5.8732 -3.2285 0.9580 23 1 6.9665 -3.4724 -1.3467 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084248594.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -66.880674 kcal Electronic energy + Delta-G solvation = -10891.630264 eV Core-core repulsion = 8705.252134 eV Total energy + Delta-G solvation = -2186.378129 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.58576 -37.62592 -36.47212 -33.31237 -31.36599 -27.35472 -26.31932 -22.70795 -20.66836 -19.43640 -17.39961 -16.80035 -15.89649 -15.65858 -14.64878 -14.22223 -13.83669 -13.44221 -13.19188 -12.64691 -12.29379 -11.85665 -11.29505 -11.21990 -10.65224 -10.15521 -9.85909 -9.38737 -9.08584 -8.69937 -8.52025 -6.08219 -4.08678 1.50759 3.17136 3.24330 3.32879 3.33654 3.39990 4.34147 4.38149 4.84889 4.94888 5.23707 5.24834 5.68831 6.07394 6.23610 6.68057 6.85482 6.91068 7.02231 7.57542 7.65171 8.26981 8.44703 9.00495 9.50767 11.04969 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.056392 B = 0.013100 C = 0.011791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.409366 B = 2136.862686 C = 2374.205284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.003 3.997 10 C -0.142 4.142 11 H 0.120 0.880 12 C 0.101 3.899 13 N -0.708 5.708 14 C 0.469 3.531 15 O -0.514 6.514 16 C 0.356 3.644 17 O -0.359 6.359 18 H 0.264 0.736 19 H 0.021 0.979 20 H 0.032 0.968 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -2.754 2.651 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.100 0.900 9 C -0.034 4.034 10 C -0.162 4.162 11 H 0.137 0.863 12 C -0.024 4.024 13 N -0.367 5.367 14 C 0.252 3.748 15 O -0.389 6.389 16 C 0.221 3.779 17 O -0.222 6.222 18 H 0.074 0.926 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 11.648 -3.022 1.844 12.174 hybrid contribution 0.924 0.970 0.021 1.340 sum 12.572 -2.052 1.865 12.874 Atomic orbital electron populations 1.69903 1.06282 1.26923 1.50235 1.24985 0.94727 0.98939 0.94460 0.86862 0.80383 0.84010 0.78500 1.20105 1.21226 1.19114 1.21083 0.88590 0.95251 1.51558 0.89960 1.19557 0.98386 0.87937 0.97543 1.22403 0.93243 1.02552 0.97977 0.86250 1.22168 0.94908 0.98633 0.86643 1.45580 1.08896 1.59761 1.22438 1.21579 0.89310 0.79157 0.84726 1.90747 1.86953 1.40379 1.20866 1.24225 0.88274 0.76883 0.88530 1.90462 1.26373 1.40331 1.65079 0.92597 0.96081 0.94973 0.89730 0.90123 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 14 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 14 3 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 14 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 14 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 14 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 14 7 C -0.53 -14.40 8.91 -34.44 -0.31 -14.70 14 8 H 0.08 2.49 7.41 -52.49 -0.39 2.10 14 9 C 0.00 0.07 3.32 -27.88 -0.09 -0.02 14 10 C -0.14 -2.43 3.01 -91.02 -0.27 -2.70 14 11 H 0.12 1.90 8.14 -51.93 -0.42 1.48 14 12 C 0.10 1.18 7.51 -3.77 -0.03 1.15 14 13 N -0.71 -8.94 6.19 -60.76 -0.38 -9.32 14 14 C 0.47 8.32 8.35 -12.06 -0.10 8.22 14 15 O -0.51 -10.77 18.03 3.65 0.07 -10.70 14 16 C 0.36 7.10 7.15 -29.33 -0.21 6.89 14 17 O -0.36 -8.69 16.85 4.14 0.07 -8.62 14 18 H 0.26 7.53 8.31 -40.82 -0.34 7.19 14 19 H 0.02 0.46 7.19 -51.93 -0.37 0.09 14 20 H 0.03 0.63 7.57 -51.93 -0.39 0.24 14 21 H 0.08 0.90 7.69 -51.93 -0.40 0.51 14 22 H 0.08 0.70 8.14 -51.93 -0.42 0.27 14 23 H 0.41 3.94 8.96 -40.82 -0.37 3.57 14 LS Contribution 210.38 15.07 3.17 3.17 Total: -1.00 -33.70 210.38 -4.01 -37.71 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -1.93 Total: -2.49 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.11 Total: 0.76 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.14 Total: -19.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -33.70 -4.01 -37.71 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084248594.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.172 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds