Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.41820 * 305.70117 * 10 9 7 12 12 C 1.53712 * 110.46259 * 183.21054 * 10 9 7 13 13 N 1.46315 * 106.75741 * 241.29849 * 12 10 9 14 14 C 1.33876 * 111.43484 * 359.97438 * 13 12 10 15 15 O 1.21363 * 124.45438 * 179.97438 * 14 13 12 16 16 C 1.49293 * 111.12810 * 359.93820 * 14 13 12 17 17 O 1.20781 * 126.94415 * 180.08579 * 16 14 13 18 18 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 20 20 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 21 21 H 1.09003 * 110.00354 * 0.61833 * 12 10 9 22 22 H 1.08997 * 110.00154 * 121.92965 * 12 10 9 23 23 H 0.97006 * 124.28671 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5860 -3.1939 0.8292 12 6 5.5563 -2.6639 0.0812 13 7 6.0316 -3.3208 -1.1368 14 6 5.0130 -3.6862 -1.9249 15 8 5.1387 -4.2487 -2.9930 16 6 3.7015 -3.3120 -1.3175 17 8 2.6041 -3.5073 -1.7825 18 1 -0.4850 0.8400 -0.0004 19 1 3.8752 -0.6796 -0.8894 20 1 3.8746 -0.6807 0.8905 21 1 5.9452 -1.6469 0.1322 22 1 5.8732 -3.2285 0.9580 23 1 6.9665 -3.4724 -1.3467 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084248594.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -94.846459 kcal Electronic energy + Delta-G solvation = -10892.842951 eV Core-core repulsion = 8705.252134 eV Total energy + Delta-G solvation = -2187.590817 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.00736 -39.21716 -37.86731 -35.19804 -33.11523 -29.06491 -27.63715 -24.44267 -22.14534 -20.89057 -18.86098 -18.67824 -17.32929 -17.13931 -16.35382 -15.95594 -15.18576 -14.97375 -14.77684 -14.29742 -13.90883 -13.59004 -12.90212 -12.72355 -12.36668 -11.79432 -11.71970 -11.40269 -10.75008 -10.21147 -10.11377 -8.23043 -6.28725 -0.00681 1.39696 1.44163 1.53356 1.89456 1.99107 2.40333 3.05066 3.13179 3.54659 3.65224 4.13535 4.71307 4.81588 4.90783 5.19891 5.35329 5.52063 5.64151 5.69755 6.22064 6.30562 6.82924 7.01035 7.34688 8.94550 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.056392 B = 0.013100 C = 0.011791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.409366 B = 2136.862686 C = 2374.205284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.952 3.048 4 H -0.255 1.255 5 H -0.297 1.297 6 H -0.238 1.238 7 C -0.532 4.532 8 H 0.031 0.969 9 C 0.003 3.997 10 C -0.143 4.143 11 H 0.129 0.871 12 C 0.110 3.890 13 N -0.672 5.672 14 C 0.469 3.531 15 O -0.556 6.556 16 C 0.344 3.656 17 O -0.422 6.422 18 H 0.264 0.736 19 H 0.022 0.978 20 H 0.067 0.933 21 H 0.114 0.886 22 H 0.132 0.868 23 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.261 -1.576 4.051 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.775 3.225 4 H -0.179 1.179 5 H -0.223 1.223 6 H -0.161 1.161 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.034 4.034 10 C -0.162 4.162 11 H 0.147 0.853 12 C -0.013 4.013 13 N -0.331 5.331 14 C 0.251 3.749 15 O -0.436 6.436 16 C 0.213 3.787 17 O -0.289 6.289 18 H 0.072 0.928 19 H 0.040 0.960 20 H 0.085 0.915 21 H 0.132 0.868 22 H 0.150 0.850 23 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 15.467 -1.848 3.295 15.922 hybrid contribution -0.275 0.526 -0.367 0.697 sum 15.192 -1.322 2.928 15.528 Atomic orbital electron populations 1.70111 1.08790 1.28012 1.52842 1.26118 0.95608 1.03897 0.94257 0.85641 0.79526 0.77640 0.79688 1.17890 1.22321 1.16099 1.21491 0.92213 0.93258 1.50066 0.95064 1.19526 0.94025 0.91080 0.98810 1.22404 0.97678 0.99651 0.96493 0.85310 1.22353 0.90185 1.01286 0.87429 1.45440 1.08933 1.57247 1.21433 1.21198 0.89416 0.79546 0.84701 1.90734 1.87243 1.42835 1.22767 1.25089 0.88390 0.75554 0.89681 1.90435 1.28884 1.42811 1.66780 0.92757 0.96014 0.91542 0.86779 0.85022 0.72010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.72 13.96 21.45 0.30 -60.42 14 2 C 0.00 -0.16 5.47 84.65 0.46 0.30 14 3 Si 0.95 41.78 27.47 68.60 1.88 43.66 14 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 14 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 14 6 H -0.24 -9.25 6.54 99.48 0.65 -8.60 14 7 C -0.53 -29.52 8.91 25.60 0.23 -29.29 14 8 H 0.03 1.99 7.41 -2.92 -0.02 1.97 14 9 C 0.00 0.12 3.32 29.85 0.10 0.22 14 10 C -0.14 -4.47 3.01 -11.05 -0.03 -4.51 14 11 H 0.13 3.82 8.14 -2.39 -0.02 3.80 14 12 C 0.11 1.91 7.51 86.65 0.65 2.56 14 13 N -0.67 -13.80 6.19 -465.00 -2.88 -16.68 14 14 C 0.47 15.85 8.35 87.36 0.73 16.58 14 15 O -0.56 -23.14 18.03 -1.53 -0.03 -23.17 14 16 C 0.34 13.71 7.15 28.91 0.21 13.92 14 17 O -0.42 -21.54 16.85 0.24 0.00 -21.54 14 18 H 0.26 15.63 8.31 -92.71 -0.77 14.86 14 19 H 0.02 0.87 7.19 -2.39 -0.02 0.85 14 20 H 0.07 2.26 7.57 -2.39 -0.02 2.24 14 21 H 0.11 1.53 7.69 -2.39 -0.02 1.51 14 22 H 0.13 1.21 8.14 -2.39 -0.02 1.19 14 23 H 0.44 5.93 8.96 -92.70 -0.83 5.10 14 Total: -1.00 -79.68 210.38 1.97 -77.70 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 0.35 Total: 0.66 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 2.34 Total: -0.21 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -2.58 Total: -77.10 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.02 Total: -44.71 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.66 kcal Total: -79.68 1.97 -77.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084248594.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds