Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.91941 * 2 1 4 4 C 1.31772 * 117.12846 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.75137 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47062 * 305.01897 * 5 4 3 7 7 H 1.07998 * 119.99503 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00434 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99826 * 359.72891 * 8 6 5 10 10 Si 1.86800 * 120.00406 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46758 * 269.72576 * 10 8 6 12 12 H 1.48499 * 109.47026 * 29.72423 * 10 8 6 13 13 H 1.48496 * 109.47474 * 149.72459 * 10 8 6 14 14 C 1.33639 * 114.50264 * 0.22955 * 4 3 2 15 15 S 1.70981 * 124.91764 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.46883 * 90.00175 * 1 2 3 17 17 H 1.09003 * 109.46909 * 209.99776 * 1 2 3 18 18 H 1.08993 * 109.46900 * 329.99638 * 1 2 3 19 19 H 1.09004 * 109.47406 * 185.02603 * 5 4 3 20 20 H 1.08993 * 109.47274 * 65.02229 * 5 4 3 21 21 H 0.97000 * 120.00236 * 0.27947 * 9 8 6 22 22 H 1.08007 * 126.04156 * 179.76602 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 -0.0012 6 6 4.2371 2.9361 -1.1648 7 1 3.4224 2.7090 -1.8364 8 6 5.0079 4.0604 -1.3715 9 7 5.9960 4.3404 -0.5500 10 14 4.6435 5.1906 -2.8135 11 1 5.4232 4.7491 -3.9977 12 1 3.1932 5.1393 -3.1284 13 1 5.0244 6.5818 -2.4606 14 6 3.9354 -0.4006 -0.0059 15 16 2.4857 -1.4020 -0.0006 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5138 18 1 -0.3633 0.8899 0.5139 19 1 5.5448 1.6353 -0.0916 20 1 4.4375 2.5829 0.9303 21 1 6.1851 3.7537 0.1990 22 1 4.9546 -0.7581 -0.0108 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084274584.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 3.674752 kcal Electronic energy + Delta-G solvation = -8726.568272 eV Core-core repulsion = 6986.002527 eV Total energy + Delta-G solvation = -1740.565746 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.77703 -35.79351 -33.46953 -30.21499 -28.77367 -25.51675 -23.44162 -20.68674 -19.33972 -17.99625 -16.39949 -15.98162 -15.65639 -15.00900 -14.40323 -14.21996 -13.91208 -13.19667 -13.10714 -12.90925 -12.52122 -12.08034 -11.91925 -10.97168 -10.62132 -10.45278 -10.31581 -9.50130 -8.71506 -6.41952 -0.17759 0.50727 0.76479 1.49130 1.59258 1.78338 1.93489 2.54543 3.10664 3.29789 4.16676 4.30614 4.52043 4.64033 4.67362 4.84498 5.03768 5.13231 5.32985 5.88058 6.11528 6.50287 7.00676 7.35419 8.67929 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.063762 B = 0.011032 C = 0.010012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.028970 B = 2537.436915 C = 2796.006831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.033 3.967 3 N -0.506 5.506 4 C 0.081 3.919 5 C 0.073 3.927 6 C -0.596 4.596 7 H 0.040 0.960 8 C -0.035 4.035 9 N -0.934 5.934 10 Si 1.123 2.877 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.277 1.277 14 C -0.288 4.288 15 S 0.152 5.848 16 H 0.098 0.902 17 H 0.112 0.888 18 H 0.084 0.916 19 H 0.019 0.981 20 H 0.001 0.999 21 H 0.256 0.744 22 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 -11.466 -0.011 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.245 4.245 3 N -0.222 5.222 4 C -0.049 4.049 5 C 0.033 3.967 6 C -0.634 4.634 7 H 0.058 0.942 8 C -0.232 4.232 9 N -0.572 5.572 10 Si 0.943 3.057 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.202 1.202 14 C -0.426 4.426 15 S 0.406 5.594 16 H 0.117 0.883 17 H 0.130 0.870 18 H 0.102 0.898 19 H 0.037 0.963 20 H 0.019 0.981 21 H 0.066 0.934 22 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.305 -10.673 -0.742 14.179 hybrid contribution 0.587 -0.526 1.038 1.304 sum -8.717 -11.199 0.296 14.195 Atomic orbital electron populations 1.20628 0.82356 1.05314 1.05023 1.27959 1.03636 0.90879 1.02060 1.66067 1.05438 1.33326 1.17372 1.20505 0.90376 0.95072 0.98988 1.17852 0.91596 0.90731 0.96498 1.22118 1.17686 1.10925 1.12667 0.94183 1.27443 0.92806 0.99005 1.03995 1.70891 1.30315 1.40025 1.15949 0.82865 0.76284 0.74335 0.72177 1.19340 1.20220 1.20231 1.26985 1.04604 0.95501 1.15521 1.83005 0.95957 1.11009 1.69462 0.88329 0.86967 0.89773 0.96332 0.98061 0.93434 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.46 71.24 0.75 -0.90 14 2 C 0.03 1.12 7.39 88.52 0.65 1.77 14 3 N -0.51 -23.25 10.38 -179.40 -1.86 -25.11 14 4 C 0.08 3.89 6.02 41.52 0.25 4.14 14 5 C 0.07 4.11 4.78 29.10 0.14 4.25 14 6 C -0.60 -36.49 8.99 25.60 0.23 -36.26 14 7 H 0.04 2.50 7.73 -2.91 -0.02 2.47 14 8 C -0.04 -2.13 5.46 84.65 0.46 -1.67 14 9 N -0.93 -59.27 13.65 21.45 0.29 -58.98 14 10 Si 1.12 52.68 29.90 68.60 2.05 54.73 14 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 14 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 14 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 14 14 C -0.29 -11.14 11.07 66.78 0.74 -10.40 14 15 S 0.15 4.41 23.18 -56.49 -1.31 3.10 14 16 H 0.10 1.93 8.14 -2.39 -0.02 1.91 14 17 H 0.11 1.68 8.14 -2.39 -0.02 1.66 14 18 H 0.08 1.96 8.14 -2.39 -0.02 1.94 14 19 H 0.02 1.04 7.90 -2.39 -0.02 1.02 14 20 H 0.00 0.08 8.00 -2.39 -0.02 0.06 14 21 H 0.26 16.36 7.22 -92.71 -0.67 15.69 14 22 H 0.18 6.27 8.06 -2.91 -0.02 6.24 14 Total: -1.00 -72.54 215.95 3.70 -68.84 By element: Atomic # 1 Polarization: -4.83 SS G_CDS: 1.31 Total: -3.53 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.22 Total: -39.06 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -1.57 Total: -84.09 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.73 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.31 Total: 3.10 kcal Total: -72.54 3.70 -68.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084274584.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.518 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds