Wall clock time and date at job start Mon Mar 30 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46722 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99871 * 2 1 3 5 5 C 1.52997 * 109.47327 * 66.21652 * 4 2 1 6 6 H 1.09007 * 109.47434 * 304.29699 * 5 4 2 7 7 C 1.50704 * 109.46954 * 64.29445 * 5 4 2 8 8 H 1.07997 * 119.99998 * 4.04755 * 7 5 4 9 9 C 1.37881 * 120.00087 * 184.04484 * 7 5 4 10 10 N 1.31515 * 119.99976 * 193.99918 * 9 7 5 11 11 Si 1.86806 * 120.00028 * 13.99441 * 9 7 5 12 12 H 1.48496 * 109.46649 * 93.92168 * 11 9 7 13 13 H 1.48497 * 109.47006 * 213.92508 * 11 9 7 14 14 H 1.48497 * 109.46836 * 333.92593 * 11 9 7 15 15 C 1.53001 * 109.47457 * 184.29458 * 5 4 2 16 16 C 1.52994 * 117.49742 * 8.72065 * 15 5 4 17 17 C 1.52993 * 117.49660 * 300.05928 * 15 5 4 18 18 H 1.08997 * 109.47522 * 304.35541 * 1 2 3 19 19 H 1.09000 * 109.47505 * 64.36147 * 1 2 3 20 20 H 1.09010 * 109.47061 * 184.36096 * 1 2 3 21 21 H 1.08997 * 109.47056 * 240.00251 * 2 1 3 22 22 H 1.09001 * 109.46988 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47485 * 299.99718 * 3 2 1 24 24 H 1.08997 * 109.47150 * 60.00309 * 3 2 1 25 25 H 1.09003 * 109.47139 * 306.21749 * 4 2 1 26 26 H 1.09001 * 109.47457 * 186.21723 * 4 2 1 27 27 H 0.96997 * 119.99661 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54782 * 154.38888 * 15 5 4 29 29 H 1.09008 * 117.49899 * 359.97438 * 16 15 5 30 30 H 1.08998 * 117.50338 * 145.02188 * 16 15 5 31 31 H 1.09007 * 117.49616 * 214.97622 * 17 15 5 32 32 H 1.08993 * 117.50381 * 359.97066 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6616 -2.2017 1.1737 6 1 0.5838 -2.2949 1.0396 7 6 2.3701 -2.8424 0.0080 8 1 3.0747 -2.2697 -0.5767 9 6 2.1188 -4.1598 -0.3120 10 7 2.9189 -4.8005 -1.1360 11 14 0.6419 -5.0347 0.4250 12 1 -0.5091 -4.9343 -0.5079 13 1 0.9745 -6.4645 0.6489 14 1 0.2863 -4.4005 1.7198 15 6 2.0766 -2.9011 2.4697 16 6 2.5650 -2.0212 3.6220 17 6 3.5611 -2.8805 2.8393 18 1 -0.3634 0.5799 0.8483 19 1 -0.3634 0.4447 -0.9265 20 1 -0.3634 -1.0248 0.0782 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.5886 -0.2756 2.1358 26 1 3.1243 -0.6259 1.3067 27 1 2.7422 -5.7274 -1.3608 28 1 1.5066 -3.7944 2.7251 29 1 2.5910 -0.9440 3.4568 30 1 2.3168 -2.3357 4.6357 31 1 3.9677 -3.7601 3.3385 32 1 4.2421 -2.3691 2.1591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:38 Heat of formation + Delta-G solvation = 3.702475 kcal Electronic energy + Delta-G solvation = -11566.937854 eV Core-core repulsion = 9720.712540 eV Total energy + Delta-G solvation = -1846.225314 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.85341 -34.93750 -32.38166 -29.48188 -26.57069 -25.32451 -22.59884 -21.42638 -19.60687 -18.34643 -16.37377 -15.24289 -14.30049 -14.19094 -13.57362 -13.08873 -12.70309 -12.45018 -11.91280 -11.65335 -11.21816 -10.85249 -10.72850 -10.65479 -10.39384 -10.15721 -9.89077 -9.64822 -9.57150 -9.17888 -8.92639 -8.54036 -8.23534 -6.00646 -3.93098 3.33009 3.42651 3.44397 4.51259 4.84709 5.31887 5.59062 5.63771 5.65582 5.80253 5.97946 6.07361 6.11190 6.24521 6.31726 6.34750 6.39865 6.50462 6.58060 6.67078 6.75602 6.87826 6.90151 7.04387 7.19599 7.30888 7.34817 7.58995 7.90812 8.62165 9.06963 9.67112 11.12892 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.032024 B = 0.017655 C = 0.014352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.130375 B = 1585.556152 C = 1950.508810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.092 4.092 5 C 0.040 3.960 6 H 0.029 0.971 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.076 3.924 10 N -0.899 5.899 11 Si 0.858 3.142 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.250 1.250 15 C -0.134 4.134 16 C -0.213 4.213 17 C -0.162 4.162 18 H 0.041 0.959 19 H 0.041 0.959 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 7.010 5.325 9.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.129 4.129 5 C 0.022 3.978 6 H 0.047 0.953 7 C -0.538 4.538 8 H 0.090 0.910 9 C -0.125 4.125 10 N -0.537 5.537 11 Si 0.686 3.314 12 H -0.209 1.209 13 H -0.218 1.218 14 H -0.175 1.175 15 C -0.152 4.152 16 C -0.250 4.250 17 C -0.199 4.199 18 H 0.060 0.940 19 H 0.060 0.940 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.077 6.839 5.232 9.144 hybrid contribution -0.697 -0.778 0.337 1.098 sum -3.774 6.060 5.569 9.054 Atomic orbital electron populations 1.21826 0.96454 1.01854 0.99794 1.21095 0.95033 0.94381 1.00833 1.21864 1.00571 0.97383 1.00332 1.21581 0.99622 0.96584 0.95116 1.18737 0.96363 0.91135 0.91602 0.95288 1.20919 1.24774 0.96228 1.11845 0.91029 1.24931 0.95778 0.97075 0.94763 1.69978 1.36167 1.10678 1.36871 0.87272 0.84440 0.78950 0.80704 1.20910 1.21790 1.17483 1.23006 0.96417 0.99860 0.95950 1.23154 1.07703 0.98259 0.95842 1.22621 0.93978 1.00818 1.02516 0.94026 0.93967 0.91986 0.89744 0.93254 0.93685 0.93725 0.94198 0.93019 0.92999 0.89474 0.89025 0.91011 0.90861 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.06 37.16 0.34 -2.07 16 2 C -0.10 -1.75 2.80 -90.62 -0.25 -2.00 16 3 C -0.14 -2.21 9.19 37.16 0.34 -1.86 16 4 C -0.09 -1.81 2.72 -26.73 -0.07 -1.88 16 5 C 0.04 0.92 1.59 -91.77 -0.15 0.78 16 6 H 0.03 0.68 5.06 -51.92 -0.26 0.42 16 7 C -0.50 -13.53 7.78 -34.44 -0.27 -13.80 16 8 H 0.07 2.11 7.44 -52.49 -0.39 1.72 16 9 C 0.08 2.15 5.37 -17.82 -0.10 2.06 16 10 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 11 Si 0.86 21.26 26.33 -169.99 -4.48 16.78 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.25 -5.81 4.87 56.52 0.28 -5.53 16 15 C -0.13 -2.92 4.73 -90.63 -0.43 -3.35 16 16 C -0.21 -3.91 9.58 -26.70 -0.26 -4.16 16 17 C -0.16 -3.32 9.55 -26.70 -0.25 -3.58 16 18 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 20 H 0.06 1.15 6.34 -51.92 -0.33 0.82 16 21 H 0.08 1.77 6.83 -51.93 -0.35 1.42 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.72 6.66 -51.93 -0.35 0.38 16 26 H 0.05 1.05 7.39 -51.93 -0.38 0.66 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.97 5.47 -51.93 -0.28 1.68 16 29 H 0.09 1.60 5.81 -51.92 -0.30 1.29 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 32 H 0.09 2.00 7.65 -51.93 -0.40 1.60 16 LS Contribution 245.71 15.07 3.70 3.70 Total: -1.00 -28.53 245.71 -6.37 -34.90 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.27 Total: 1.05 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -1.10 Total: -29.88 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.48 Total: 16.78 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.53 -6.37 -34.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.603 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds