Wall clock time and date at job start Mon Mar 30 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46722 * 2 1 4 4 C 1.52998 * 109.47150 * 119.99871 * 2 1 3 5 5 C 1.52997 * 109.47327 * 66.21652 * 4 2 1 6 6 H 1.09007 * 109.47434 * 304.29699 * 5 4 2 7 7 C 1.50704 * 109.46954 * 64.29445 * 5 4 2 8 8 H 1.07997 * 119.99998 * 4.04755 * 7 5 4 9 9 C 1.37881 * 120.00087 * 184.04484 * 7 5 4 10 10 N 1.31515 * 119.99976 * 193.99918 * 9 7 5 11 11 Si 1.86806 * 120.00028 * 13.99441 * 9 7 5 12 12 H 1.48496 * 109.46649 * 93.92168 * 11 9 7 13 13 H 1.48497 * 109.47006 * 213.92508 * 11 9 7 14 14 H 1.48497 * 109.46836 * 333.92593 * 11 9 7 15 15 C 1.53001 * 109.47457 * 184.29458 * 5 4 2 16 16 C 1.52994 * 117.49742 * 8.72065 * 15 5 4 17 17 C 1.52993 * 117.49660 * 300.05928 * 15 5 4 18 18 H 1.08997 * 109.47522 * 304.35541 * 1 2 3 19 19 H 1.09000 * 109.47505 * 64.36147 * 1 2 3 20 20 H 1.09010 * 109.47061 * 184.36096 * 1 2 3 21 21 H 1.08997 * 109.47056 * 240.00251 * 2 1 3 22 22 H 1.09001 * 109.46988 * 179.97438 * 3 2 1 23 23 H 1.08997 * 109.47485 * 299.99718 * 3 2 1 24 24 H 1.08997 * 109.47150 * 60.00309 * 3 2 1 25 25 H 1.09003 * 109.47139 * 306.21749 * 4 2 1 26 26 H 1.09001 * 109.47457 * 186.21723 * 4 2 1 27 27 H 0.96997 * 119.99661 * 179.97438 * 10 9 7 28 28 H 1.09000 * 115.54782 * 154.38888 * 15 5 4 29 29 H 1.09008 * 117.49899 * 359.97438 * 16 15 5 30 30 H 1.08998 * 117.50338 * 145.02188 * 16 15 5 31 31 H 1.09007 * 117.49616 * 214.97622 * 17 15 5 32 32 H 1.08993 * 117.50381 * 359.97066 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6616 -2.2017 1.1737 6 1 0.5838 -2.2949 1.0396 7 6 2.3701 -2.8424 0.0080 8 1 3.0747 -2.2697 -0.5767 9 6 2.1188 -4.1598 -0.3120 10 7 2.9189 -4.8005 -1.1360 11 14 0.6419 -5.0347 0.4250 12 1 -0.5091 -4.9343 -0.5079 13 1 0.9745 -6.4645 0.6489 14 1 0.2863 -4.4005 1.7198 15 6 2.0766 -2.9011 2.4697 16 6 2.5650 -2.0212 3.6220 17 6 3.5611 -2.8805 2.8393 18 1 -0.3634 0.5799 0.8483 19 1 -0.3634 0.4447 -0.9265 20 1 -0.3634 -1.0248 0.0782 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4426 0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.5886 -0.2756 2.1358 26 1 3.1243 -0.6259 1.3067 27 1 2.7422 -5.7274 -1.3608 28 1 1.5066 -3.7944 2.7251 29 1 2.5910 -0.9440 3.4568 30 1 2.3168 -2.3357 4.6357 31 1 3.9677 -3.7601 3.3385 32 1 4.2421 -2.3691 2.1591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084328356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:38 Heat of formation + Delta-G solvation = -12.302225 kcal Electronic energy + Delta-G solvation = -11567.631870 eV Core-core repulsion = 9720.712540 eV Total energy + Delta-G solvation = -1846.919330 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50724 -36.41440 -34.49483 -31.25660 -27.87449 -27.13265 -24.42633 -22.98754 -21.12114 -20.17693 -18.34806 -16.90036 -16.21130 -15.76791 -15.20867 -14.71271 -14.43945 -14.12602 -13.46446 -12.95643 -12.79544 -12.75239 -12.39553 -12.20174 -12.07535 -11.88573 -11.54444 -11.32439 -11.13071 -10.89160 -10.62817 -10.56546 -10.15858 -8.20820 -6.15677 1.35023 1.39332 1.47846 2.42734 3.11502 3.29583 4.10171 4.15618 4.24951 4.34993 4.41063 4.44814 4.78614 4.82947 4.90858 4.93615 5.00102 5.07834 5.10250 5.18571 5.25426 5.28986 5.40189 5.47513 5.61509 5.68546 5.74293 5.83065 5.88908 6.45261 6.88366 7.47153 8.96499 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.032024 B = 0.017655 C = 0.014352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.130375 B = 1585.556152 C = 1950.508810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.086 4.086 5 C 0.040 3.960 6 H 0.029 0.971 7 C -0.488 4.488 8 H 0.029 0.971 9 C 0.016 3.984 10 N -0.952 5.952 11 Si 0.917 3.083 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.221 1.221 15 C -0.165 4.165 16 C -0.171 4.171 17 C -0.176 4.176 18 H 0.066 0.934 19 H 0.054 0.946 20 H 0.040 0.960 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.259 0.741 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 8.438 7.598 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.194 4.194 4 C -0.123 4.123 5 C 0.021 3.979 6 H 0.047 0.953 7 C -0.526 4.526 8 H 0.047 0.953 9 C -0.180 4.180 10 N -0.593 5.593 11 Si 0.742 3.258 12 H -0.207 1.207 13 H -0.223 1.223 14 H -0.144 1.144 15 C -0.183 4.183 16 C -0.208 4.208 17 C -0.213 4.213 18 H 0.085 0.915 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.590 8.293 7.524 12.101 hybrid contribution -0.153 -1.159 -0.415 1.241 sum -4.743 7.134 7.108 11.132 Atomic orbital electron populations 1.21790 0.95031 1.01134 1.01659 1.21064 0.96297 0.95949 0.98412 1.21783 1.00346 0.95239 1.02068 1.21522 0.99088 0.94782 0.96935 1.18695 0.95643 0.93045 0.90513 0.95280 1.21159 1.23264 0.95749 1.12441 0.95258 1.25726 0.98468 0.98176 0.95602 1.70128 1.38531 1.11097 1.39539 0.86330 0.80748 0.77467 0.81231 1.20744 1.22286 1.14418 1.22892 0.97238 1.01072 0.97107 1.23214 1.03379 0.98365 0.95798 1.22618 0.93246 1.02107 1.03314 0.91524 0.92671 0.94059 0.93835 0.93654 0.92365 0.91548 0.91418 0.94232 0.93203 0.89985 0.87646 0.88091 0.89932 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.06 71.98 0.65 -3.75 16 2 C -0.10 -3.52 2.80 -10.79 -0.03 -3.55 16 3 C -0.14 -3.87 9.19 71.98 0.66 -3.20 16 4 C -0.09 -3.25 2.72 30.59 0.08 -3.16 16 5 C 0.04 1.78 1.59 -11.54 -0.02 1.76 16 6 H 0.03 1.32 5.06 -2.38 -0.01 1.31 16 7 C -0.49 -27.19 7.78 25.60 0.20 -26.99 16 8 H 0.03 1.83 7.44 -2.91 -0.02 1.81 16 9 C 0.02 0.95 5.37 84.66 0.45 1.41 16 10 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 11 Si 0.92 44.10 26.33 68.60 1.81 45.91 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.22 -9.54 4.87 99.48 0.48 -9.05 16 15 C -0.16 -6.83 4.73 -10.80 -0.05 -6.89 16 16 C -0.17 -5.59 9.58 30.62 0.29 -5.30 16 17 C -0.18 -6.94 9.55 30.62 0.29 -6.64 16 18 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 19 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 20 H 0.04 1.46 6.34 -2.38 -0.02 1.44 16 21 H 0.04 1.88 6.83 -2.39 -0.02 1.87 16 22 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 2.19 6.66 -2.39 -0.02 2.17 16 26 H 0.04 1.57 7.39 -2.39 -0.02 1.55 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.08 3.48 5.47 -2.39 -0.01 3.46 16 29 H 0.11 3.17 5.81 -2.38 -0.01 3.16 16 30 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.07 3.16 7.65 -2.39 -0.02 3.14 16 Total: -1.00 -63.07 245.71 5.49 -57.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.85 Total: 12.72 kcal Atomic # 6 Polarization: -58.84 SS G_CDS: 2.54 Total: -56.31 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.30 Total: -59.90 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.81 Total: 45.91 kcal Total: -63.07 5.49 -57.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.277 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds