Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46603 * 2 1 4 4 C 1.50695 * 109.47245 * 240.00170 * 2 1 3 5 5 H 1.07997 * 119.99693 * 245.62251 * 4 2 1 6 6 C 1.37872 * 120.00224 * 65.62214 * 4 2 1 7 7 N 1.31518 * 120.00333 * 197.56827 * 6 4 2 8 8 Si 1.86801 * 120.00071 * 17.56868 * 6 4 2 9 9 H 1.48499 * 109.47520 * 180.02562 * 8 6 4 10 10 H 1.48511 * 109.47027 * 299.99798 * 8 6 4 11 11 H 1.48493 * 109.47307 * 59.99855 * 8 6 4 12 12 C 1.50704 * 109.46798 * 119.99786 * 2 1 3 13 13 C 1.33631 * 126.03784 * 239.71549 * 12 2 1 14 14 N 1.31787 * 114.49960 * 179.79063 * 13 12 2 15 15 C 1.29028 * 117.12194 * 0.52314 * 14 13 12 16 16 S 1.70974 * 110.16825 * 359.71195 * 15 14 13 17 17 H 1.09001 * 109.46951 * 66.23816 * 1 2 3 18 18 H 1.08997 * 109.47249 * 186.23638 * 1 2 3 19 19 H 1.08994 * 109.47532 * 306.23772 * 1 2 3 20 20 H 0.97000 * 119.99881 * 354.84507 * 7 6 4 21 21 H 1.08003 * 122.75144 * 359.97438 * 13 12 2 22 22 H 1.07994 * 124.91358 * 179.75001 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.5763 -1.6383 -1.1339 6 6 1.7976 -0.1756 -2.4793 7 7 1.9151 -0.9298 -3.5504 8 14 1.3125 1.6202 -2.6504 9 1 1.1179 1.9459 -4.0861 10 1 0.0470 1.8636 -1.9122 11 1 2.3861 2.4786 -2.0887 12 6 2.0323 -0.7104 1.2305 13 6 2.8081 -0.1821 2.1817 14 7 3.1095 -1.0087 3.1628 15 6 2.6397 -2.2080 3.0868 16 16 1.7066 -2.3866 1.6653 17 1 -0.3633 0.4141 -0.9406 18 1 -0.3633 -1.0215 0.1116 19 1 -0.3634 0.6074 0.8288 20 1 2.2389 -1.8405 -3.4691 21 1 3.1569 0.8396 2.1506 22 1 2.8105 -2.9862 3.8159 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084328481.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = 32.060655 kcal Electronic energy + Delta-G solvation = -8941.552230 eV Core-core repulsion = 7202.217389 eV Total energy + Delta-G solvation = -1739.334840 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -38.95875 -34.77409 -31.72180 -28.50278 -25.02937 -24.43560 -20.86364 -19.42122 -17.71789 -16.84201 -15.21096 -14.02156 -13.71360 -13.37923 -12.93194 -12.81614 -12.07508 -11.47167 -11.14195 -10.88672 -10.50507 -9.96832 -9.80667 -9.15049 -9.01359 -8.56979 -8.39744 -8.14126 -6.55021 -4.19045 1.42468 2.03727 2.48504 3.32155 3.37594 3.46350 3.54707 4.40343 4.88111 5.16366 5.74859 5.84138 6.12893 6.30953 6.52799 6.60898 6.78295 6.98467 7.25474 7.89408 8.26058 8.28023 8.77917 9.49583 10.83722 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.065103 B = 0.013916 C = 0.013010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.984062 B = 2011.660400 C = 2151.595019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.043 0.957 4 C -0.600 4.600 5 H 0.060 0.940 6 C 0.035 3.965 7 N -0.899 5.899 8 Si 1.044 2.956 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.281 1.281 12 C -0.126 4.126 13 C -0.023 4.023 14 N -0.469 5.469 15 C -0.032 4.032 16 S 0.117 5.883 17 H 0.062 0.938 18 H 0.045 0.955 19 H 0.027 0.973 20 H 0.269 0.731 21 H 0.168 0.832 22 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 0.048 8.644 8.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.638 4.638 5 H 0.078 0.922 6 C -0.171 4.171 7 N -0.533 5.533 8 Si 0.872 3.128 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.208 1.208 12 C -0.247 4.247 13 C -0.171 4.171 14 N -0.182 5.182 15 C -0.330 4.330 16 S 0.367 5.633 17 H 0.081 0.919 18 H 0.064 0.936 19 H 0.046 0.954 20 H 0.079 0.921 21 H 0.185 0.815 22 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.589 0.491 7.606 8.049 hybrid contribution 0.945 -0.448 1.137 1.545 sum -1.645 0.042 8.742 8.896 Atomic orbital electron populations 1.22303 0.97477 1.00381 1.00337 1.17813 0.92481 0.95253 0.88909 0.93933 1.21950 1.41379 1.10116 0.90390 0.92201 1.25780 0.94356 1.05078 0.91892 1.70862 1.41061 1.09918 1.31420 0.84053 0.77247 0.75187 0.76318 1.20963 1.19858 1.20760 1.26512 1.01400 0.95380 1.01425 1.21632 1.02786 1.01227 0.91457 1.66211 1.22313 1.02413 1.27288 1.28045 1.04202 0.98140 1.02576 1.83947 1.48988 1.12545 1.17776 0.91918 0.93552 0.95369 0.92081 0.81514 0.79626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.85 37.16 0.33 -2.80 14 2 C 0.08 1.78 2.29 -92.92 -0.21 1.57 14 3 H 0.04 0.97 6.76 -51.93 -0.35 0.62 14 4 C -0.60 -16.32 8.76 -34.44 -0.30 -16.62 14 5 H 0.06 1.77 7.99 -52.49 -0.42 1.35 14 6 C 0.03 0.97 5.29 -17.82 -0.09 0.88 14 7 N -0.90 -26.87 13.70 55.43 0.76 -26.11 14 8 Si 1.04 24.14 26.29 -169.99 -4.47 19.67 14 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 10 H -0.27 -5.75 5.76 56.52 0.33 -5.43 14 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 14 12 C -0.13 -2.67 5.09 -35.92 -0.18 -2.85 14 13 C -0.02 -0.45 11.22 -19.18 -0.22 -0.67 14 14 N -0.47 -8.99 10.54 -15.75 -0.17 -9.16 14 15 C -0.03 -0.54 12.23 51.58 0.63 0.09 14 16 S 0.12 2.15 22.87 -107.50 -2.46 -0.30 14 17 H 0.06 1.37 4.89 -51.93 -0.25 1.12 14 18 H 0.05 0.97 7.86 -51.93 -0.41 0.56 14 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 14 20 H 0.27 8.04 8.73 -40.82 -0.36 7.68 14 21 H 0.17 3.00 8.06 -52.48 -0.42 2.58 14 22 H 0.19 2.36 8.06 -52.49 -0.42 1.94 14 LS Contribution 207.57 15.07 3.13 3.13 Total: -1.00 -29.54 207.57 -5.18 -34.73 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -1.93 Total: -1.55 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.59 Total: -35.27 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.47 Total: 19.67 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.46 Total: -0.30 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -29.54 -5.18 -34.73 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084328481.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.787 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds