Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.50696 * 109.47139 * 269.99698 * 6 5 4 8 8 H 1.07999 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00136 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46774 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47451 * 119.99634 * 11 9 7 14 14 H 1.48504 * 109.47024 * 240.00348 * 11 9 7 15 15 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 16 16 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 17 17 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 18 18 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 19 19 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 20 20 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 21 21 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 22 22 H 0.97004 * 119.99771 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8084 -2.5016 -1.4371 8 1 4.3516 -1.9639 -2.2548 9 6 5.6896 -3.5301 -1.6953 10 7 6.2463 -4.1847 -0.6996 11 14 6.0930 -3.9940 -3.4593 12 1 5.3406 -3.1120 -4.3873 13 1 7.5503 -3.8310 -3.6932 14 1 5.7080 -5.4079 -3.6997 15 7 2.2199 -1.1083 -0.0065 16 1 -0.3633 -0.0048 1.0277 17 1 -0.3633 -0.8876 -0.5180 18 1 -0.3633 0.8924 -0.5097 19 1 1.8392 2.1308 0.0006 20 1 5.3966 -1.8274 0.5003 21 1 4.0439 -2.9843 0.4958 22 1 6.8666 -4.9080 -0.8812 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087395772.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = 26.177346 kcal Electronic energy + Delta-G solvation = -8669.291837 eV Core-core repulsion = 6929.701877 eV Total energy + Delta-G solvation = -1739.589960 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.07711 -33.60876 -31.66984 -28.74908 -26.99089 -24.25190 -21.34728 -18.83874 -16.94974 -16.44503 -14.85974 -14.25511 -14.13757 -13.05771 -12.59933 -12.58077 -12.13818 -11.74056 -11.30810 -10.79781 -10.71465 -10.69006 -10.05108 -9.56385 -8.79858 -8.66707 -8.48888 -7.94224 -6.13027 -4.17370 1.48310 2.13688 2.53846 3.27458 3.34497 3.39590 3.53576 4.39109 4.88695 5.23794 5.53364 5.64050 5.83307 5.96096 6.12935 6.36935 6.87517 7.29684 7.39511 7.81211 8.12670 8.59719 8.84491 9.46361 10.97221 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061617 B = 0.011068 C = 0.010634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.310544 B = 2529.267419 C = 2632.476341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.070 3.930 3 C -0.303 4.303 4 S 0.076 5.924 5 C 0.128 3.872 6 C 0.083 3.917 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.902 3.098 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 N -0.498 5.498 16 H 0.069 0.931 17 H 0.072 0.928 18 H 0.067 0.933 19 H 0.163 0.837 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 8.372 1.094 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.063 4.063 3 C -0.442 4.442 4 S 0.331 5.669 5 C -0.149 4.149 6 C 0.042 3.958 7 C -0.552 4.552 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.729 3.271 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 N -0.212 5.212 16 H 0.088 0.912 17 H 0.091 0.909 18 H 0.086 0.914 19 H 0.181 0.819 20 H 0.062 0.938 21 H 0.072 0.928 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.055 8.269 1.148 9.759 hybrid contribution -0.638 -0.219 -0.949 1.164 sum -5.692 8.050 0.199 9.861 Atomic orbital electron populations 1.20284 0.88172 1.02683 1.02234 1.20335 0.97850 0.87236 1.00847 1.26469 0.95781 1.03007 1.18957 1.83865 1.07224 1.06058 1.69705 1.28206 0.93850 0.98094 0.94790 1.18174 0.90135 0.88282 0.99173 1.20940 1.26191 1.17522 0.90551 0.92250 1.24969 0.95598 0.95754 0.97735 1.69955 1.29763 1.22334 1.30889 0.86374 0.78120 0.78448 0.84179 1.19622 1.20768 1.20756 1.66258 1.05093 1.30404 1.19478 0.91226 0.90874 0.91426 0.81915 0.93808 0.92778 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.31 36.01 0.37 -0.67 14 2 C 0.07 1.31 6.74 -84.22 -0.57 0.75 14 3 C -0.30 -5.20 11.13 29.12 0.32 -4.87 14 4 S 0.08 1.45 23.18 -107.50 -2.49 -1.04 14 5 C 0.13 2.99 6.58 -13.46 -0.09 2.90 14 6 C 0.08 2.17 5.56 -29.04 -0.16 2.01 14 7 C -0.51 -14.46 9.09 -34.44 -0.31 -14.78 14 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 14 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 14 10 N -0.89 -25.93 13.29 55.43 0.74 -25.20 14 11 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 14 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 14 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 14 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 14 15 N -0.50 -11.34 10.53 -8.06 -0.08 -11.42 14 16 H 0.07 0.86 8.14 -51.93 -0.42 0.44 14 17 H 0.07 1.05 8.14 -51.93 -0.42 0.62 14 18 H 0.07 0.77 8.12 -51.93 -0.42 0.35 14 19 H 0.16 2.20 8.06 -52.49 -0.42 1.78 14 20 H 0.04 1.15 8.14 -51.93 -0.42 0.73 14 21 H 0.05 1.51 8.14 -51.93 -0.42 1.09 14 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 14 LS Contribution 217.51 15.07 3.28 3.28 Total: -1.00 -30.01 217.51 -6.19 -36.21 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -2.08 Total: -5.29 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.53 Total: -13.02 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.65 Total: -36.62 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.49 Total: -1.04 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.01 -6.19 -36.21 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087395772.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.383 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds