Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.50696 * 109.47139 * 269.99698 * 6 5 4 8 8 H 1.07999 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00136 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00052 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46774 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47451 * 119.99634 * 11 9 7 14 14 H 1.48504 * 109.47024 * 240.00348 * 11 9 7 15 15 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 16 16 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 17 17 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 18 18 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 19 19 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 20 20 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 21 21 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 22 22 H 0.97004 * 119.99771 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8084 -2.5016 -1.4371 8 1 4.3516 -1.9639 -2.2548 9 6 5.6896 -3.5301 -1.6953 10 7 6.2463 -4.1847 -0.6996 11 14 6.0930 -3.9940 -3.4593 12 1 5.3406 -3.1120 -4.3873 13 1 7.5503 -3.8310 -3.6932 14 1 5.7080 -5.4079 -3.6997 15 7 2.2199 -1.1083 -0.0065 16 1 -0.3633 -0.0048 1.0277 17 1 -0.3633 -0.8876 -0.5180 18 1 -0.3633 0.8924 -0.5097 19 1 1.8392 2.1308 0.0006 20 1 5.3966 -1.8274 0.5003 21 1 4.0439 -2.9843 0.4958 22 1 6.8666 -4.9080 -0.8812 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087395772.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = 6.610481 kcal Electronic energy + Delta-G solvation = -8670.140320 eV Core-core repulsion = 6929.701877 eV Total energy + Delta-G solvation = -1740.438443 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.63198 -35.62618 -33.37152 -30.52161 -28.35640 -26.24029 -23.09907 -20.37726 -18.69514 -18.41631 -16.72504 -15.85780 -15.65823 -14.62378 -14.42575 -14.18895 -13.47536 -13.21635 -13.16134 -12.66964 -12.59883 -12.10779 -12.05676 -11.60109 -10.68436 -10.40119 -10.23356 -9.47017 -8.27009 -6.40732 -0.07262 0.60320 1.00208 1.39520 1.40286 1.53650 1.97455 2.39054 3.05080 3.43078 4.28546 4.41486 4.51418 4.81414 4.91092 4.94220 5.17159 5.27626 5.52016 5.62934 6.00545 6.66307 7.03549 7.27587 8.83410 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.061617 B = 0.011068 C = 0.010634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.310544 B = 2529.267419 C = 2632.476341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.041 3.959 3 C -0.275 4.275 4 S 0.113 5.887 5 C 0.076 3.924 6 C 0.093 3.907 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.011 3.989 10 N -0.924 5.924 11 Si 0.971 3.029 12 H -0.268 1.268 13 H -0.270 1.270 14 H -0.276 1.276 15 N -0.523 5.523 16 H 0.086 0.914 17 H 0.063 0.937 18 H 0.101 0.899 19 H 0.210 0.790 20 H 0.030 0.970 21 H 0.020 0.980 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 10.126 0.166 12.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 C -0.413 4.413 4 S 0.368 5.632 5 C -0.201 4.201 6 C 0.052 3.948 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.563 5.563 11 Si 0.795 3.205 12 H -0.192 1.192 13 H -0.195 1.195 14 H -0.201 1.201 15 N -0.239 5.239 16 H 0.104 0.896 17 H 0.082 0.918 18 H 0.120 0.880 19 H 0.227 0.773 20 H 0.048 0.952 21 H 0.038 0.962 22 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.933 10.025 0.227 11.651 hybrid contribution -0.426 -0.656 -0.603 0.988 sum -6.359 9.368 -0.376 11.329 Atomic orbital electron populations 1.20416 0.84865 1.03919 1.03699 1.21017 0.99965 0.86535 1.01568 1.27053 0.94116 1.04677 1.15475 1.83587 1.08792 1.02359 1.68465 1.27550 0.93972 0.99721 0.98870 1.17766 0.90330 0.88795 0.97875 1.21178 1.26556 1.17997 0.91329 0.93043 1.25878 0.95224 0.95467 1.02241 1.70060 1.30240 1.22805 1.33154 0.85310 0.78364 0.78166 0.78679 1.19246 1.19463 1.20099 1.66218 1.05347 1.33283 1.19029 0.89563 0.91811 0.88050 0.77286 0.95155 0.96225 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.31 71.24 0.73 -1.01 14 2 C 0.04 1.43 6.74 41.52 0.28 1.71 14 3 C -0.27 -8.43 11.13 66.78 0.74 -7.68 14 4 S 0.11 4.17 23.18 -56.49 -1.31 2.86 14 5 C 0.08 3.60 6.58 88.52 0.58 4.18 14 6 C 0.09 5.10 5.56 29.10 0.16 5.26 14 7 C -0.53 -30.85 9.09 25.60 0.23 -30.62 14 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 14 9 C 0.01 0.64 5.46 84.65 0.46 1.10 14 10 N -0.92 -54.97 13.29 21.45 0.28 -54.68 14 11 Si 0.97 44.31 29.54 68.60 2.03 46.34 14 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 14 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 14 14 H -0.28 -12.23 7.11 99.48 0.71 -11.53 14 15 N -0.52 -23.87 10.53 -179.40 -1.89 -25.76 14 16 H 0.09 1.86 8.14 -2.39 -0.02 1.84 14 17 H 0.06 1.71 8.14 -2.39 -0.02 1.69 14 18 H 0.10 1.83 8.12 -2.38 -0.02 1.81 14 19 H 0.21 4.39 8.06 -2.91 -0.02 4.37 14 20 H 0.03 1.69 8.14 -2.39 -0.02 1.67 14 21 H 0.02 1.17 8.14 -2.38 -0.02 1.15 14 22 H 0.27 14.90 8.31 -92.71 -0.77 14.13 14 Total: -1.00 -65.98 217.51 3.52 -62.46 By element: Atomic # 1 Polarization: -5.38 SS G_CDS: 1.21 Total: -4.17 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.20 Total: -27.05 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.60 Total: -80.44 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.31 Total: 2.86 kcal Total: -65.98 3.52 -62.46 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087395772.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.073 kcal (2) G-P(sol) polarization free energy of solvation -65.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds