Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31308 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99707 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00228 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99849 * 3 2 1 7 7 C 1.39140 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99583 * 359.97438 * 7 2 1 9 9 N 1.36716 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99951 * 179.97438 * 9 7 2 11 11 O 1.21613 * 119.99966 * 0.02562 * 10 9 7 12 12 C 1.47639 * 120.00145 * 180.27778 * 10 9 7 13 13 N 1.32082 * 126.87055 * 359.40848 * 12 10 9 14 14 N 1.28804 * 107.89434 * 179.83602 * 13 12 10 15 15 N 1.28654 * 109.82280 * 0.44449 * 14 13 12 16 16 N 1.29020 * 109.12152 * 359.72356 * 15 14 13 17 17 H 0.96993 * 126.54701 * 180.02562 * 16 15 14 18 18 H 0.96996 * 119.99704 * 359.97438 * 1 2 3 19 19 H 0.97000 * 120.00312 * 0.02562 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 2.4946 2.0464 -1.4001 5 1 1.4445 2.6526 0.7001 6 1 3.5446 1.4402 0.7001 7 6 2.0088 -1.2050 -0.0005 8 1 1.4687 -2.1403 -0.0005 9 7 3.3760 -1.2050 -0.0011 10 6 4.0498 -2.3722 -0.0011 11 8 3.4417 -3.4254 -0.0011 12 6 5.5262 -2.3722 0.0046 13 7 6.3188 -1.3157 -0.0010 14 7 7.5368 -1.7345 0.0105 15 7 7.5557 -3.0209 0.0139 16 7 6.3431 -3.4615 0.0105 17 1 6.0663 -4.3911 0.0122 18 1 -0.4849 0.8400 0.0004 19 1 3.8610 -0.3650 -0.0007 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087443177.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = 53.937599 kcal Electronic energy + Delta-G solvation = -10511.889383 eV Core-core repulsion = 8259.502735 eV Total energy + Delta-G solvation = -2252.386648 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.050 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.30112 -40.38636 -36.53684 -35.68261 -34.18160 -33.45068 -28.09658 -25.56389 -25.07436 -22.20320 -21.16180 -19.78204 -18.47556 -18.14713 -17.11349 -15.83623 -15.67017 -14.99024 -14.68417 -14.28272 -13.71978 -13.12173 -12.77252 -12.68901 -12.54268 -12.06691 -11.77921 -11.52739 -11.14656 -10.50543 -8.63318 -6.19902 -0.43265 0.69195 1.00636 1.33897 1.35561 1.43759 1.92440 2.11836 2.41762 2.96104 3.01729 3.52245 3.98644 4.20785 5.26190 5.39200 5.68449 6.24332 6.53757 7.01727 7.25026 7.47931 8.49748 Molecular weight = 183.05amu Principal moments of inertia in cm(-1) A = 0.065488 B = 0.012796 C = 0.010745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.454964 B = 2187.702212 C = 2605.308306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.251 1.251 5 H -0.260 1.260 6 H -0.240 1.240 7 C -0.329 4.329 8 H 0.084 0.916 9 N -0.523 5.523 10 C 0.502 3.498 11 O -0.600 6.600 12 C 0.187 3.813 13 N -0.296 5.296 14 N -0.087 5.087 15 N -0.067 5.067 16 N -0.357 5.357 17 H 0.479 0.521 18 H 0.292 0.708 19 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 -0.211 0.031 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.192 4.192 3 Si 0.763 3.237 4 H -0.175 1.175 5 H -0.184 1.184 6 H -0.163 1.163 7 C -0.459 4.459 8 H 0.102 0.898 9 N -0.160 5.160 10 C 0.286 3.714 11 O -0.485 6.485 12 C -0.094 4.094 13 N -0.151 5.151 14 N -0.082 5.082 15 N -0.055 5.055 16 N -0.093 5.093 17 H 0.332 0.668 18 H 0.102 0.898 19 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.079 -0.032 0.030 10.079 hybrid contribution -0.857 -0.252 0.004 0.893 sum 9.222 -0.284 0.034 9.227 Atomic orbital electron populations 1.69663 1.07815 1.30529 1.44448 1.26019 0.96362 1.02309 0.94530 0.85646 0.79742 0.77567 0.80795 1.17508 1.18420 1.16327 1.19217 0.79648 0.96386 1.50654 0.89754 1.41757 1.06831 1.07073 1.60333 1.15836 0.81786 0.85062 0.88758 1.90724 1.67702 1.31255 1.58848 1.25683 0.96476 0.83834 1.03390 1.75335 0.96913 1.24371 1.18458 1.78472 1.12974 1.01192 1.15597 1.78697 1.02024 1.07831 1.16938 1.46230 1.02963 1.12976 1.47115 0.66803 0.89810 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.80 13.95 21.70 0.30 -47.50 13 2 C 0.01 0.69 5.50 84.99 0.47 1.15 13 3 Si 0.94 36.21 27.74 68.60 1.90 38.11 13 4 H -0.25 -9.22 7.11 99.48 0.71 -8.51 13 5 H -0.26 -9.61 7.11 99.48 0.71 -8.90 13 6 H -0.24 -8.46 6.52 99.48 0.65 -7.81 13 7 C -0.33 -17.53 10.16 84.15 0.85 -16.67 13 8 H 0.08 5.18 7.38 -2.91 -0.02 5.16 13 9 N -0.52 -23.94 5.08 -309.83 -1.57 -25.51 13 10 C 0.50 21.89 7.77 86.73 0.67 22.57 13 11 O -0.60 -29.48 16.68 -4.07 -0.07 -29.55 13 12 C 0.19 6.70 8.20 136.38 1.12 7.82 13 13 N -0.30 -10.74 12.11 -51.39 -0.62 -11.36 13 14 N -0.09 -2.96 13.40 37.02 0.50 -2.46 13 15 N -0.07 -2.00 13.46 37.02 0.50 -1.50 13 16 N -0.36 -10.08 7.11 -51.48 -0.37 -10.45 13 17 H 0.48 10.08 8.96 -220.20 -1.97 8.11 13 18 H 0.29 14.18 8.31 -92.71 -0.77 13.41 13 19 H 0.40 16.31 5.50 -92.71 -0.51 15.80 13 Total: -1.00 -60.58 192.04 2.47 -58.10 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -1.21 Total: 17.26 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 3.11 Total: 14.87 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -1.26 Total: -98.79 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.07 Total: -29.55 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 1.90 Total: 38.11 kcal Total: -60.58 2.47 -58.10 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087443177.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.042 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds