Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86799 * 120.00386 * 2 1 4 4 H 1.48493 * 109.47106 * 270.00628 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00391 * 3 2 1 6 6 H 1.48501 * 109.47178 * 150.00423 * 3 2 1 7 7 C 1.38659 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99775 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99799 * 359.97438 * 7 2 1 10 10 C 1.35788 * 116.99855 * 185.06968 * 9 7 2 11 11 C 1.39141 * 120.49572 * 354.48105 * 10 9 7 12 12 C 1.38596 * 118.39290 * 179.97438 * 11 10 9 13 13 C 1.38186 * 119.29055 * 359.97438 * 12 11 10 14 14 N 1.31948 * 120.94583 * 0.03021 * 13 12 11 15 15 C 1.31952 * 121.75678 * 359.97301 * 14 13 12 16 16 F 1.35097 * 119.69938 * 180.02562 * 15 14 13 17 17 H 0.97000 * 119.99745 * 359.97438 * 1 2 3 18 18 H 1.08000 * 120.80103 * 0.24652 * 11 10 9 19 19 H 1.08006 * 120.35688 * 180.02562 * 12 11 10 20 20 H 1.08000 * 119.52790 * 180.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4400 0.6999 7 6 2.0089 -1.2009 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0701 -3.5048 0.1058 11 6 3.4604 -3.4499 0.0939 12 6 4.1678 -4.6365 0.2058 13 6 3.4765 -5.8271 0.3253 14 7 2.1572 -5.8477 0.3334 15 6 1.4447 -4.7420 0.2293 16 9 0.0955 -4.8114 0.2429 17 1 -0.4850 0.8401 0.0004 18 1 3.9758 -2.5051 0.0041 19 1 5.2478 -4.6307 0.2006 20 1 4.0239 -6.7539 0.4131 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087542531.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = -57.156079 kcal Electronic energy + Delta-G solvation = -10508.181054 eV Core-core repulsion = 8198.764309 eV Total energy + Delta-G solvation = -2309.416744 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 183.044 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -49.76305 -41.17873 -39.06117 -34.47454 -32.94880 -30.92055 -27.64594 -24.44466 -24.04737 -20.16634 -19.45683 -18.47945 -17.60665 -17.13413 -16.32999 -15.69927 -15.43987 -15.29865 -14.63153 -14.13918 -13.75734 -13.60069 -13.09545 -12.75208 -12.13972 -11.78808 -11.01174 -10.68079 -10.52417 -9.31381 -8.55460 -6.26345 0.09962 0.34472 1.36153 1.46412 1.55321 2.10745 2.68352 2.69419 3.00963 3.31792 3.76507 4.03695 4.18133 4.56649 4.88887 4.96685 5.22846 5.25450 5.75719 5.86576 6.80417 6.85589 7.53787 8.66257 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.062590 B = 0.012909 C = 0.010751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.247442 B = 2168.538464 C = 2603.899943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.028 2.972 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.423 4.423 8 H 0.117 0.883 9 O -0.213 6.213 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.107 4.107 13 C 0.046 3.954 14 N -0.489 5.489 15 C 0.190 3.810 16 F -0.138 7.138 17 H 0.277 0.723 18 H 0.156 0.844 19 H 0.188 0.812 20 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.856 -3.391 0.347 11.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.846 3.154 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.167 1.167 7 C -0.498 4.498 8 H 0.134 0.866 9 O -0.117 6.117 10 C -0.003 4.003 11 C -0.202 4.202 12 C -0.126 4.126 13 C -0.112 4.112 14 N -0.204 5.204 15 C 0.036 3.964 16 F -0.118 7.118 17 H 0.086 0.914 18 H 0.173 0.827 19 H 0.205 0.795 20 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.918 -3.973 0.406 10.692 hybrid contribution -0.222 1.404 -0.111 1.426 sum 9.696 -2.569 0.295 10.035 Atomic orbital electron populations 1.70218 1.08451 1.29395 1.46970 1.26805 0.96859 1.03175 0.95069 0.84464 0.77929 0.73604 0.79428 1.18602 1.19901 1.16743 1.22058 0.93147 0.80631 1.54003 0.86567 1.84037 1.35597 1.12365 1.79710 1.20574 0.93386 0.87609 0.98718 1.21824 0.90995 1.01974 1.05369 1.22430 1.03273 0.90707 0.96191 1.22956 0.86505 1.00354 1.01398 1.66885 1.11488 1.28068 1.13990 1.17566 0.78316 0.88751 1.11797 1.91475 1.28771 1.96907 1.94625 0.91431 0.82680 0.79478 0.77780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.20 13.67 21.62 0.30 -54.90 14 2 C -0.02 -1.09 5.49 84.83 0.47 -0.63 14 3 Si 1.03 40.24 29.55 68.60 2.03 42.26 14 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 14 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 14 6 H -0.24 -8.58 7.11 99.48 0.71 -7.87 14 7 C -0.42 -23.43 9.50 67.92 0.65 -22.78 14 8 H 0.12 5.56 5.26 -2.91 -0.02 5.55 14 9 O -0.21 -12.69 9.63 -23.01 -0.22 -12.91 14 10 C 0.05 2.61 6.68 22.71 0.15 2.76 14 11 C -0.17 -6.73 9.26 22.57 0.21 -6.52 14 12 C -0.11 -3.00 10.10 22.34 0.23 -2.77 14 13 C 0.05 1.36 11.17 84.66 0.95 2.31 14 14 N -0.49 -19.91 10.37 -196.41 -2.04 -21.94 14 15 C 0.19 9.20 8.43 84.90 0.72 9.91 14 16 F -0.14 -7.24 17.14 44.97 0.77 -6.47 14 17 H 0.28 15.22 8.31 -92.71 -0.77 14.45 14 18 H 0.16 5.58 5.76 -2.91 -0.02 5.56 14 19 H 0.19 3.17 8.06 -2.91 -0.02 3.15 14 20 H 0.21 3.93 8.06 -2.91 -0.02 3.90 14 Total: -1.00 -71.20 197.78 5.47 -65.73 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.27 Total: 5.94 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.36 Total: -17.72 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.74 Total: -76.84 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.22 Total: -12.91 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.77 Total: -6.47 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -71.20 5.47 -65.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087542531.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.579 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds