Wall clock time and date at job start Mon Mar 30 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.20761 * 119.99839 * 95.00241 * 12 2 1 14 14 C 1.50697 * 119.99822 * 274.99769 * 12 2 1 15 15 C 1.53778 * 113.61617 * 252.49590 * 14 12 2 16 16 C 1.53774 * 87.08677 * 220.02284 * 15 14 12 17 17 C 1.53782 * 87.08009 * 25.43046 * 16 15 14 18 18 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 20 20 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 21 21 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 22 22 H 1.08998 * 112.85186 * 23.80781 * 14 12 2 23 23 H 1.09004 * 113.61526 * 334.57397 * 15 14 12 24 24 H 1.09000 * 113.61281 * 105.47020 * 15 14 12 25 25 H 1.08997 * 113.61576 * 270.89029 * 16 15 14 26 26 H 1.08991 * 113.61849 * 139.98077 * 16 15 14 27 27 H 1.08999 * 113.61893 * 220.01427 * 17 16 15 28 28 H 1.09004 * 113.68564 * 89.12747 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 8 2.3195 -1.8821 1.1764 14 6 2.1762 0.0416 2.5286 15 6 3.6368 0.3206 2.9202 16 6 3.2283 -0.0021 4.3672 17 6 2.0967 -0.8578 3.7735 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 0.7173 1.1669 -3.4844 22 1 1.5328 0.9197 2.5826 23 1 4.3459 -0.3913 2.4976 24 1 3.9379 1.3577 2.7725 25 1 2.8735 0.8649 4.9244 26 1 3.9734 -0.5811 4.9125 27 1 1.1545 -0.7721 4.3148 28 1 2.3833 -1.8922 3.5839 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087585692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:51 Heat of formation + Delta-G solvation = -33.978914 kcal Electronic energy + Delta-G solvation = -11033.533012 eV Core-core repulsion = 9049.840615 eV Total energy + Delta-G solvation = -1983.692397 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.43022 -36.65653 -33.70917 -30.54829 -26.50607 -25.40190 -25.09213 -22.36441 -19.51374 -18.22643 -16.23964 -15.77712 -14.90039 -14.69714 -13.70801 -13.46156 -12.71635 -12.31825 -12.15242 -11.62529 -11.39642 -11.02751 -10.95776 -10.70853 -10.59806 -10.23995 -10.17920 -10.09461 -9.97004 -8.94067 -8.42666 -8.06533 -6.01300 -4.06362 3.06597 3.31601 3.39137 3.46769 4.44157 4.88041 4.94163 4.95226 5.22254 5.31647 5.48135 5.87128 5.92562 6.04941 6.09973 6.19109 6.37677 6.62566 6.68189 6.81277 6.94818 7.05122 7.55643 7.79784 8.03005 8.29292 8.77165 8.99548 9.58576 11.05362 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.067877 B = 0.010939 C = 0.010430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.411998 B = 2558.990250 C = 2683.860883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.001 4.001 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.373 3.627 13 O -0.469 6.469 14 C -0.171 4.171 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.128 4.128 18 H 0.030 0.970 19 H 0.013 0.987 20 H 0.092 0.908 21 H 0.260 0.740 22 H 0.105 0.895 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 1.023 9.313 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.249 3.751 13 O -0.343 6.343 14 C -0.190 4.190 15 C -0.156 4.156 16 C -0.178 4.178 17 C -0.165 4.165 18 H 0.049 0.951 19 H 0.032 0.968 20 H 0.111 0.889 21 H 0.070 0.930 22 H 0.124 0.876 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.849 0.505 9.144 9.343 hybrid contribution 0.195 -0.202 -0.901 0.943 sum 2.044 0.303 8.244 8.499 Atomic orbital electron populations 1.21629 0.96155 0.99754 1.00940 1.19222 0.94369 0.97279 0.91160 0.93248 1.21162 1.31201 1.12374 0.89608 0.91546 1.24951 0.95090 0.95006 0.99078 1.69880 1.37092 1.23008 1.23373 0.86455 0.78703 0.79753 0.82692 1.19649 1.20967 1.21006 1.25034 0.71287 0.88222 0.90569 1.90198 1.38605 1.18699 1.86759 1.23280 0.99119 1.00867 0.95748 1.22706 0.95051 1.01972 0.95872 1.22821 0.98686 0.99926 0.96351 1.22830 0.98669 0.99374 0.95677 0.95078 0.96795 0.88912 0.93010 0.87642 0.89888 0.91058 0.90311 0.91664 0.91700 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.95 37.16 0.33 -2.73 15 2 C 0.00 -0.04 2.56 -92.92 -0.24 -0.27 15 3 H 0.05 1.29 8.14 -51.93 -0.42 0.86 15 4 C -0.51 -14.50 8.33 -34.44 -0.29 -14.79 15 5 H 0.07 1.99 7.03 -52.49 -0.37 1.62 15 6 C 0.06 1.68 5.31 -17.82 -0.09 1.58 15 7 N -0.89 -25.54 11.33 55.43 0.63 -24.91 15 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 15 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 12 C 0.37 8.46 5.67 -29.03 -0.16 8.29 15 13 O -0.47 -11.85 15.52 6.00 0.09 -11.75 15 14 C -0.17 -2.99 4.08 -90.96 -0.37 -3.36 15 15 C -0.12 -1.81 7.63 -25.92 -0.20 -2.00 15 16 C -0.14 -1.80 8.08 -25.92 -0.21 -2.01 15 17 C -0.13 -1.95 7.54 -25.92 -0.20 -2.14 15 18 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 19 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 15 20 H 0.09 2.43 6.08 -51.93 -0.32 2.12 15 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 22 H 0.11 1.69 8.14 -51.93 -0.42 1.27 15 23 H 0.08 1.36 8.09 -51.93 -0.42 0.94 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 1.49 7.39 -51.93 -0.38 1.10 15 LS Contribution 237.90 15.07 3.59 3.59 Total: -1.00 -30.02 237.90 -6.15 -36.16 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.01 Total: -2.54 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -1.43 Total: -17.44 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.63 Total: -24.91 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.02 -6.15 -36.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087585692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.185 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds