Wall clock time and date at job start Mon Mar 30 2020 02:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47024 * 240.00236 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99612 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38420 * 122.53559 * 100.00131 * 12 9 7 14 14 C 1.33389 * 114.91988 * 179.97438 * 13 12 9 15 15 S 1.75887 * 109.59261 * 0.02562 * 14 13 12 16 16 C 1.33384 * 122.53731 * 279.71123 * 12 9 7 17 17 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 18 18 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 19 19 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 20 20 H 1.07999 * 122.54549 * 359.95261 * 13 12 9 21 21 H 1.07999 * 125.20618 * 179.97438 * 14 13 12 22 22 H 1.07993 * 125.20549 * 0.02562 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.5600 -4.3422 1.1498 14 6 3.4420 -5.3275 0.9756 15 16 3.9065 -5.4107 -0.7188 16 6 2.8406 -4.0667 -1.1078 17 1 -0.4850 0.8401 0.0004 18 1 -0.3005 -1.8576 -1.1911 19 1 0.9651 -2.5260 -2.0381 20 1 2.1355 -4.1064 2.1144 21 1 3.8147 -5.9747 1.7557 22 1 2.7032 -3.6460 -2.0929 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095659377.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:57 Heat of formation + Delta-G solvation = 24.969092 kcal Electronic energy + Delta-G solvation = -8928.716287 eV Core-core repulsion = 7189.073933 eV Total energy + Delta-G solvation = -1739.642354 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -37.63572 -33.94328 -31.15452 -28.18749 -26.17962 -23.82962 -20.89357 -17.84977 -16.99846 -16.46644 -14.90888 -14.27132 -13.73913 -12.99358 -12.39039 -12.10658 -11.85222 -11.39508 -11.13564 -10.88259 -10.78187 -10.40822 -10.01227 -9.53669 -8.65347 -8.04875 -7.65393 -7.16707 -6.08723 -4.25545 1.76873 2.36935 2.68873 3.23832 3.28817 3.31529 3.65707 4.34035 5.13050 5.56545 5.97012 6.28084 6.29478 6.66016 6.91353 7.06579 7.21530 7.73768 7.77355 8.11037 8.67546 8.93485 9.12161 9.46121 10.88506 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.064038 B = 0.012047 C = 0.011405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.135498 B = 2323.653259 C = 2454.433788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.259 3.741 10 H 0.047 0.953 11 N -0.849 5.849 12 C -0.054 4.054 13 C -0.115 4.115 14 C -0.225 4.225 15 S 0.020 5.980 16 C -0.201 4.201 17 H 0.266 0.734 18 H 0.355 0.645 19 H 0.310 0.690 20 H 0.134 0.866 21 H 0.154 0.846 22 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -6.154 -0.310 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.147 3.853 10 H 0.065 0.935 11 N -0.378 5.378 12 C -0.065 4.065 13 C -0.147 4.147 14 C -0.360 4.360 15 S 0.281 5.719 16 C -0.336 4.336 17 H 0.076 0.924 18 H 0.171 0.829 19 H 0.119 0.881 20 H 0.152 0.848 21 H 0.171 0.829 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.316 -7.682 -0.862 9.382 hybrid contribution -0.018 2.845 0.684 2.926 sum 5.298 -4.837 -0.179 7.177 Atomic orbital electron populations 1.69738 1.05842 1.27316 1.50463 1.25025 0.94948 0.99296 0.94399 0.86560 0.79550 0.82580 0.78757 1.20230 1.21185 1.20154 1.21822 0.93664 0.91063 1.51758 0.92636 1.17723 0.88498 0.87407 0.91703 0.93544 1.59514 1.18444 1.56008 1.03880 1.19494 0.98467 0.97491 0.91061 1.20218 0.98753 0.95726 0.99966 1.25316 1.06424 1.05729 0.98535 1.83770 1.47850 1.36096 1.04158 1.25111 1.03682 1.01826 1.02950 0.92400 0.82865 0.88064 0.84788 0.82877 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 11.54 55.43 0.64 -24.02 14 2 C 0.07 1.77 5.38 -17.82 -0.10 1.68 14 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 14 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 14 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 14 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 7 C -0.54 -14.72 8.71 -34.44 -0.30 -15.02 14 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 14 9 C 0.26 6.54 3.03 -70.01 -0.21 6.32 14 10 H 0.05 1.28 8.09 -51.93 -0.42 0.86 14 11 N -0.85 -20.49 9.04 -6.65 -0.06 -20.55 14 12 C -0.05 -1.19 4.80 -106.25 -0.51 -1.70 14 13 C -0.11 -2.25 9.95 -41.21 -0.41 -2.66 14 14 C -0.23 -3.83 11.23 29.04 0.33 -3.50 14 15 S 0.02 0.34 23.34 -107.50 -2.51 -2.17 14 16 C -0.20 -4.05 10.41 29.04 0.30 -3.75 14 17 H 0.27 7.02 8.31 -40.82 -0.34 6.68 14 18 H 0.36 9.11 7.08 -39.29 -0.28 8.84 14 19 H 0.31 7.11 7.72 -39.29 -0.30 6.80 14 20 H 0.13 2.46 8.06 -52.49 -0.42 2.04 14 21 H 0.15 2.10 8.06 -52.49 -0.42 1.67 14 22 H 0.16 3.02 7.17 -52.49 -0.38 2.64 14 LS Contribution 210.50 15.07 3.17 3.17 Total: -1.00 -27.43 210.50 -6.44 -33.87 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -1.76 Total: 12.33 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.90 Total: -18.62 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.58 Total: -44.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -2.51 Total: -2.17 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -27.43 -6.44 -33.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659377.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.837 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds