Wall clock time and date at job start Mon Mar 30 2020 02:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00346 * 2 1 4 4 H 1.48495 * 109.47024 * 240.00236 * 3 2 1 5 5 H 1.48505 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99612 * 3 2 1 7 7 C 1.37881 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99948 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47188 * 300.00019 * 9 7 2 11 11 N 1.46905 * 109.47125 * 59.99797 * 9 7 2 12 12 C 1.50703 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.38420 * 122.53559 * 100.00131 * 12 9 7 14 14 C 1.33389 * 114.91988 * 179.97438 * 13 12 9 15 15 S 1.75887 * 109.59261 * 0.02562 * 14 13 12 16 16 C 1.33384 * 122.53731 * 279.71123 * 12 9 7 17 17 H 0.97005 * 119.99709 * 359.97438 * 1 2 3 18 18 H 1.00901 * 110.99869 * 296.04907 * 11 9 7 19 19 H 1.00896 * 110.99543 * 60.00030 * 11 9 7 20 20 H 1.07999 * 122.54549 * 359.95261 * 13 12 9 21 21 H 1.07999 * 125.20618 * 179.97438 * 14 13 12 22 22 H 1.07993 * 125.20549 * 0.02562 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4068 -2.5772 -1.1992 12 6 2.2302 -3.6447 0.0005 13 6 2.5600 -4.3422 1.1498 14 6 3.4420 -5.3275 0.9756 15 16 3.9065 -5.4107 -0.7188 16 6 2.8406 -4.0667 -1.1078 17 1 -0.4850 0.8401 0.0004 18 1 -0.3005 -1.8576 -1.1911 19 1 0.9651 -2.5260 -2.0381 20 1 2.1355 -4.1064 2.1144 21 1 3.8147 -5.9747 1.7557 22 1 2.7032 -3.6460 -2.0929 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095659377.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:57 Heat of formation + Delta-G solvation = 6.740402 kcal Electronic energy + Delta-G solvation = -8929.506742 eV Core-core repulsion = 7189.073933 eV Total energy + Delta-G solvation = -1740.432809 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 183.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.25029 -35.84358 -33.12212 -29.76750 -28.16617 -25.59240 -22.58166 -19.45612 -18.58163 -18.47801 -16.71954 -16.00111 -15.47997 -14.89883 -14.04449 -13.78863 -13.40027 -13.11184 -12.96848 -12.71644 -12.62768 -12.06343 -11.93348 -11.30263 -10.71164 -9.51659 -9.29456 -8.99605 -8.11604 -6.38543 0.29633 0.96470 1.20731 1.38238 1.38775 1.47283 2.05431 2.39310 3.04689 4.22160 4.37964 4.64450 4.79077 4.89473 5.25998 5.32762 5.59902 5.63489 5.96193 6.11722 6.63213 6.91464 7.10515 7.37685 8.81837 Molecular weight = 183.04amu Principal moments of inertia in cm(-1) A = 0.064038 B = 0.012047 C = 0.011405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.135498 B = 2323.653259 C = 2454.433788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.046 0.954 9 C 0.260 3.740 10 H 0.011 0.989 11 N -0.841 5.841 12 C -0.081 4.081 13 C -0.149 4.149 14 C -0.207 4.207 15 S 0.091 5.909 16 C -0.222 4.222 17 H 0.268 0.732 18 H 0.345 0.655 19 H 0.317 0.683 20 H 0.135 0.865 21 H 0.193 0.807 22 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.241 -6.875 -0.416 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.599 4.599 8 H 0.064 0.936 9 C 0.148 3.852 10 H 0.029 0.971 11 N -0.370 5.370 12 C -0.093 4.093 13 C -0.180 4.180 14 C -0.342 4.342 15 S 0.353 5.647 16 C -0.357 4.357 17 H 0.077 0.923 18 H 0.159 0.841 19 H 0.127 0.873 20 H 0.153 0.847 21 H 0.210 0.790 22 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.848 -8.422 -0.975 10.898 hybrid contribution -0.458 2.973 0.701 3.089 sum 6.390 -5.448 -0.274 8.402 Atomic orbital electron populations 1.69839 1.06942 1.28102 1.50690 1.25755 0.95765 1.02341 0.93957 0.85582 0.78367 0.78774 0.78714 1.19749 1.20563 1.19990 1.22024 0.93303 0.92426 1.52189 0.93589 1.17528 0.88607 0.88615 0.90481 0.97084 1.59482 1.18188 1.55274 1.04043 1.19363 0.99173 0.97731 0.92984 1.20236 1.00935 0.97371 0.99495 1.25802 1.04138 1.04316 0.99901 1.83512 1.45204 1.32874 1.03140 1.25260 1.04571 1.03415 1.02462 0.92250 0.84057 0.87319 0.84708 0.79032 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.18 11.54 21.45 0.25 -50.93 14 2 C 0.02 1.20 5.38 84.66 0.46 1.65 14 3 Si 0.96 43.10 29.54 68.60 2.03 45.12 14 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 14 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 14 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 14 7 C -0.56 -30.84 8.71 25.60 0.22 -30.61 14 8 H 0.05 2.56 7.74 -2.91 -0.02 2.54 14 9 C 0.26 13.49 3.03 43.42 0.13 13.62 14 10 H 0.01 0.64 8.09 -2.39 -0.02 0.62 14 11 N -0.84 -41.52 9.04 -174.95 -1.58 -43.10 14 12 C -0.08 -3.57 4.80 -20.92 -0.10 -3.67 14 13 C -0.15 -5.73 9.95 21.22 0.21 -5.52 14 14 C -0.21 -6.37 11.23 66.72 0.75 -5.62 14 15 S 0.09 2.77 23.34 -56.49 -1.32 1.45 14 16 C -0.22 -8.72 10.41 66.72 0.69 -8.03 14 17 H 0.27 14.24 8.31 -92.70 -0.77 13.47 14 18 H 0.34 18.16 7.08 -89.69 -0.63 17.52 14 19 H 0.32 14.74 7.72 -89.70 -0.69 14.04 14 20 H 0.14 4.99 8.06 -2.91 -0.02 4.97 14 21 H 0.19 4.34 8.06 -2.91 -0.02 4.31 14 22 H 0.15 5.91 7.17 -2.91 -0.02 5.89 14 Total: -1.00 -58.16 210.50 1.65 -56.51 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.09 Total: 29.12 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.36 Total: -38.17 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -1.33 Total: -94.04 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.32 Total: 1.45 kcal Total: -58.16 1.65 -56.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659377.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.247 kcal (2) G-P(sol) polarization free energy of solvation -58.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds