Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.01720 * 2 1 4 4 C 1.54266 * 110.03171 * 238.61320 * 2 1 3 5 5 C 1.54888 * 104.19633 * 217.05672 * 4 2 1 6 6 C 1.54886 * 102.74845 * 37.94023 * 5 4 2 7 7 H 1.09001 * 110.49005 * 80.87004 * 6 5 4 8 8 C 1.50702 * 110.48575 * 203.38217 * 6 5 4 9 9 H 1.08003 * 120.00100 * 111.96208 * 8 6 5 10 10 C 1.37874 * 119.99802 * 291.95786 * 8 6 5 11 11 N 1.31515 * 120.00218 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99862 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47286 * 269.99853 * 12 10 8 14 14 H 1.48501 * 109.47355 * 30.00346 * 12 10 8 15 15 H 1.48502 * 109.47284 * 149.99975 * 12 10 8 16 16 C 1.54086 * 109.97139 * 121.45496 * 2 1 3 17 17 C 1.52995 * 110.15812 * 0.14397 * 16 2 1 18 18 C 1.53001 * 110.00266 * 238.64689 * 16 2 1 19 19 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46993 * 299.93262 * 1 2 3 21 21 H 1.08997 * 109.47662 * 59.93644 * 1 2 3 22 22 H 1.09003 * 110.48603 * 98.37160 * 4 2 1 23 23 H 1.09007 * 110.48526 * 335.73276 * 4 2 1 24 24 H 1.08998 * 110.75341 * 279.62493 * 5 4 2 25 25 H 1.08998 * 110.75803 * 156.25678 * 5 4 2 26 26 H 0.96998 * 119.99565 * 0.02562 * 11 10 8 27 27 H 1.09001 * 109.46891 * 177.12083 * 17 16 2 28 28 H 1.09001 * 109.47526 * 297.11399 * 17 16 2 29 29 H 1.08994 * 109.47839 * 57.11695 * 17 16 2 30 30 H 1.08998 * 109.47121 * 293.99176 * 18 16 2 31 31 H 1.08996 * 109.47488 * 53.99849 * 18 16 2 32 32 H 1.09002 * 109.46675 * 173.99341 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7548 -1.2373 5 6 3.3144 -1.4994 -0.7202 6 6 2.8891 -1.9398 0.7025 7 1 2.2813 -2.8435 0.6564 8 6 4.1011 -2.1646 1.5694 9 1 4.3032 -1.5015 2.3976 10 6 4.9520 -3.2168 1.3053 11 7 4.7057 -4.0247 0.2971 12 14 6.4540 -3.4958 2.3803 13 1 7.6083 -2.7467 1.8221 14 1 6.1727 -3.0175 3.7577 15 1 6.7751 -4.9453 2.4156 16 6 2.0563 -0.7557 1.2354 17 6 0.8865 -1.2734 2.0747 18 6 2.9381 0.1683 2.0777 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5128 0.8906 21 1 -0.3634 0.5148 -0.8894 22 1 2.3288 -0.0526 -2.0259 23 1 1.3145 -1.4658 -1.5969 24 1 4.1712 -0.8271 -0.6765 25 1 3.5336 -2.3662 -1.3436 26 1 3.9255 -3.8799 -0.2608 27 1 1.2704 -1.8490 2.9169 28 1 0.3046 -0.4299 2.4463 29 1 0.2511 -1.9099 1.4590 30 1 3.8369 0.4238 1.5165 31 1 2.3875 1.0783 2.3160 32 1 3.2182 -0.3391 3.0009 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135755362.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = -30.413825 kcal Electronic energy + Delta-G solvation = -11854.346118 eV Core-core repulsion = 10006.641409 eV Total energy + Delta-G solvation = -1847.704708 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75213 -33.13011 -31.36442 -30.00214 -26.60793 -25.54515 -22.97187 -22.77146 -19.58001 -17.66909 -16.04637 -14.84140 -14.32743 -13.80296 -13.46483 -12.66476 -12.60577 -12.45540 -12.06822 -11.23320 -11.02140 -10.94176 -10.80814 -10.50508 -10.42983 -10.07778 -9.85674 -9.67083 -9.59414 -9.47632 -8.96496 -8.22375 -8.19228 -6.20037 -3.90899 3.47788 3.50900 3.66188 4.61207 5.37673 5.40931 5.49549 5.57091 5.93307 6.03855 6.11547 6.14360 6.22742 6.32216 6.36127 6.43627 6.59053 6.63182 6.71357 6.72242 6.80874 6.95366 7.12764 7.20650 7.31078 7.34304 7.46042 7.80895 8.41830 8.59642 9.03434 9.80305 11.16885 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.055863 B = 0.014252 C = 0.012854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.109963 B = 1964.227337 C = 2177.712743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.059 0.941 4 C -0.123 4.123 5 C -0.115 4.115 6 C 0.045 3.955 7 H 0.020 0.980 8 C -0.591 4.591 9 H 0.060 0.940 10 C 0.016 3.984 11 N -0.919 5.919 12 Si 1.065 2.935 13 H -0.290 1.290 14 H -0.290 1.290 15 H -0.287 1.287 16 C -0.056 4.056 17 C -0.130 4.130 18 C -0.115 4.115 19 H 0.055 0.945 20 H 0.049 0.951 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.271 0.729 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 6.515 0.529 8.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.160 4.160 5 C -0.154 4.154 6 C 0.026 3.974 7 H 0.038 0.962 8 C -0.629 4.629 9 H 0.078 0.922 10 C -0.187 4.187 11 N -0.556 5.556 12 Si 0.894 3.106 13 H -0.217 1.217 14 H -0.216 1.216 15 H -0.212 1.212 16 C -0.056 4.056 17 C -0.187 4.187 18 C -0.172 4.172 19 H 0.074 0.926 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.155 5.523 0.758 6.953 hybrid contribution -1.294 1.013 -0.299 1.671 sum -5.449 6.536 0.459 8.522 Atomic orbital electron populations 1.21965 0.96490 1.01308 1.00097 1.21877 0.94266 0.98664 0.95937 0.92279 1.22481 0.98950 0.98381 0.96213 1.22661 0.95106 0.98298 0.99310 1.19635 0.94449 0.91734 0.91567 0.96188 1.22270 1.09673 1.15275 1.15696 0.92194 1.25714 1.01779 0.93112 0.98133 1.70746 1.29358 1.38466 1.17074 0.83599 0.75561 0.76196 0.75197 1.21711 1.21641 1.21248 1.21142 0.94546 0.96574 0.93354 1.21913 0.97675 0.99463 0.99697 1.21773 0.98873 0.96397 1.00167 0.92578 0.93172 0.94111 0.93640 0.92903 0.92843 0.93003 0.91746 0.93091 0.94275 0.93432 0.92751 0.95928 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.89 37.16 0.29 -1.90 16 2 C -0.09 -1.62 3.16 -89.39 -0.28 -1.91 16 3 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 4 C -0.12 -2.36 6.36 -25.07 -0.16 -2.52 16 5 C -0.12 -2.70 5.78 -24.74 -0.14 -2.84 16 6 C 0.04 1.10 1.80 -90.11 -0.16 0.94 16 7 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16 8 C -0.59 -16.21 7.73 -34.44 -0.27 -16.48 16 9 H 0.06 1.62 5.13 -52.48 -0.27 1.35 16 10 C 0.02 0.46 5.37 -17.82 -0.10 0.37 16 11 N -0.92 -27.81 13.50 55.43 0.75 -27.06 16 12 Si 1.06 25.46 29.90 -169.99 -5.08 20.38 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.06 -1.16 0.87 -153.28 -0.13 -1.29 16 17 C -0.13 -2.45 7.20 37.16 0.27 -2.18 16 18 C -0.12 -2.32 6.90 37.16 0.26 -2.06 16 19 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 20 H 0.05 0.72 6.92 -51.93 -0.36 0.36 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 24 H 0.05 1.30 8.05 -51.93 -0.42 0.88 16 25 H 0.05 1.28 6.77 -51.93 -0.35 0.93 16 26 H 0.27 8.13 5.61 -40.82 -0.23 7.90 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.64 6.96 -51.93 -0.36 0.28 16 29 H 0.05 0.86 6.54 -51.93 -0.34 0.52 16 30 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.20 6.65 -51.93 -0.35 0.86 16 LS Contribution 240.42 15.07 3.62 3.62 Total: -1.00 -28.90 240.42 -6.24 -35.14 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.10 Total: -2.22 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -0.42 Total: -29.87 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.75 Total: -27.06 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.90 -6.24 -35.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135755362.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.728 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds