Wall clock time and date at job start Mon Mar 30 2020 01:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 C 1.52999 * 109.47271 * 240.00215 * 2 1 3 5 5 C 1.52996 * 109.47271 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47161 * 59.99603 * 5 4 2 7 7 C 1.52997 * 109.47513 * 300.00003 * 6 5 4 8 8 H 1.08999 * 109.47059 * 300.00350 * 7 6 5 9 9 C 1.50696 * 109.47288 * 179.97438 * 7 6 5 10 10 H 1.08003 * 119.99707 * 245.67377 * 9 7 6 11 11 C 1.37871 * 120.00185 * 65.67810 * 9 7 6 12 12 N 1.31518 * 120.00247 * 197.75327 * 11 9 7 13 13 Si 1.86805 * 120.00033 * 17.74114 * 11 9 7 14 14 H 1.48500 * 109.47210 * 180.02562 * 13 11 9 15 15 H 1.48505 * 109.46584 * 60.00656 * 13 11 9 16 16 H 1.48501 * 109.47091 * 300.00837 * 13 11 9 17 17 C 1.53001 * 109.47161 * 119.99818 * 2 1 3 18 18 H 1.09005 * 109.47415 * 300.00015 * 1 2 3 19 19 H 1.09000 * 109.47674 * 60.00283 * 1 2 3 20 20 H 1.09003 * 109.47322 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47279 * 179.97438 * 3 2 1 22 22 H 1.08996 * 109.46916 * 299.99935 * 3 2 1 23 23 H 1.09005 * 109.46995 * 59.99728 * 3 2 1 24 24 H 1.09003 * 109.46640 * 300.00040 * 4 2 1 25 25 H 1.09000 * 109.47178 * 59.99198 * 4 2 1 26 26 H 1.09002 * 109.46908 * 179.97438 * 5 4 2 27 27 H 1.08999 * 109.46845 * 299.99599 * 5 4 2 28 28 H 1.09002 * 109.46946 * 179.97438 * 6 5 4 29 29 H 1.08999 * 109.47244 * 60.00240 * 6 5 4 30 30 H 0.97001 * 119.99456 * 354.60575 * 12 11 9 31 31 H 1.08999 * 109.47244 * 60.00240 * 17 2 1 32 32 H 1.09002 * 109.47319 * 299.99882 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4433 0.0003 7 6 3.5695 -0.7221 1.2496 8 1 3.9332 0.3054 1.2498 9 6 4.0708 -1.4333 2.4800 10 1 3.3726 -1.9227 3.1429 11 6 5.4207 -1.4590 2.7595 12 7 5.9003 -2.3441 3.6058 13 14 6.5685 -0.2367 1.9359 14 1 7.9589 -0.4723 2.4013 15 1 6.1554 1.1454 2.2888 16 1 6.5036 -0.4119 0.4627 17 6 2.0400 -0.7212 1.2493 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 3.1300 1.4425 0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 -1.7489 -1.2492 25 1 1.6766 -0.2074 -2.1392 26 1 3.9333 -1.2360 -2.1387 27 1 3.9336 0.3058 -1.2487 28 1 5.1695 -1.4441 0.0003 29 1 3.7158 -2.4709 0.0001 30 1 5.2963 -2.9268 4.0922 31 1 1.6767 -1.7489 1.2493 32 1 1.6767 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143892280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:25 Heat of formation + Delta-G solvation = -57.144836 kcal Electronic energy + Delta-G solvation = -11777.693421 eV Core-core repulsion = 9928.829569 eV Total energy + Delta-G solvation = -1848.863852 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.30472 -35.47534 -33.57332 -31.82051 -28.11679 -27.19368 -26.32388 -22.64565 -21.58482 -19.65355 -18.99755 -16.34979 -15.79700 -15.61679 -15.13923 -14.67124 -14.43825 -14.05002 -13.66665 -13.07331 -12.93447 -12.73752 -12.54582 -12.18525 -12.15511 -11.72647 -11.67625 -11.60308 -11.30811 -11.01297 -10.70898 -10.48599 -10.28569 -8.71425 -6.33306 1.44222 1.52376 1.71856 2.49801 3.08106 3.89925 3.93186 4.03585 4.40368 4.54552 4.59649 4.63243 4.75833 4.84466 4.90832 4.94848 5.00510 5.05386 5.13595 5.19104 5.27208 5.28513 5.43666 5.46110 5.54525 5.65754 5.67629 5.91951 6.04562 6.22103 6.61398 7.44426 8.65228 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.052613 B = 0.014605 C = 0.013646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.062507 B = 1916.751730 C = 2051.410000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.098 4.098 5 C -0.119 4.119 6 C -0.119 4.119 7 C 0.019 3.981 8 H 0.028 0.972 9 C -0.603 4.603 10 H 0.008 0.992 11 C -0.026 4.026 12 N -0.946 5.946 13 Si 1.084 2.916 14 H -0.292 1.292 15 H -0.264 1.264 16 H -0.238 1.238 17 C -0.083 4.083 18 H 0.050 0.950 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.248 0.752 31 H 0.030 0.970 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 7.464 -11.765 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.136 4.136 5 C -0.157 4.157 6 C -0.157 4.157 7 C 0.000 4.000 8 H 0.046 0.954 9 C -0.641 4.641 10 H 0.026 0.974 11 C -0.222 4.222 12 N -0.582 5.582 13 Si 0.905 3.095 14 H -0.219 1.219 15 H -0.189 1.189 16 H -0.163 1.163 17 C -0.121 4.121 18 H 0.069 0.931 19 H 0.092 0.908 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.873 7.875 -11.913 15.441 hybrid contribution -1.553 -1.228 1.218 2.324 sum -7.427 6.647 -10.696 14.620 Atomic orbital electron populations 1.21810 0.93686 1.01490 1.02115 1.20617 0.95835 0.95810 0.94625 1.21933 1.01135 0.94887 1.01818 1.21524 0.94893 0.99936 0.97227 1.21641 0.96433 1.00741 0.96859 1.21910 0.99471 0.98592 0.95759 1.18977 0.93597 0.95070 0.92354 0.95411 1.22390 0.94095 1.37290 1.10296 0.97385 1.27290 0.99429 0.98113 0.97388 1.71000 1.37727 1.19809 1.29704 0.83605 0.73596 0.74616 0.77718 1.21858 1.18855 1.16252 1.21413 0.96057 0.98023 0.96562 0.93097 0.90807 0.93302 0.93089 0.90775 0.93372 0.93047 0.89901 0.91448 0.91435 0.93885 0.95050 0.94284 0.95159 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 8.47 71.98 0.61 -2.77 16 2 C -0.07 -2.12 0.77 -52.18 -0.04 -2.16 16 3 C -0.14 -3.98 7.78 71.98 0.56 -3.42 16 4 C -0.10 -2.81 4.73 30.59 0.14 -2.67 16 5 C -0.12 -3.85 5.65 30.59 0.17 -3.68 16 6 C -0.12 -5.15 4.89 30.59 0.15 -5.00 16 7 C 0.02 0.90 1.41 -11.56 -0.02 0.88 16 8 H 0.03 1.30 5.08 -2.39 -0.01 1.29 16 9 C -0.60 -35.81 8.82 25.60 0.23 -35.58 16 10 H 0.01 0.51 7.99 -2.91 -0.02 0.49 16 11 C -0.03 -1.54 5.33 84.65 0.45 -1.09 16 12 N -0.95 -61.66 13.70 21.45 0.29 -61.37 16 13 Si 1.08 51.33 26.37 68.60 1.81 53.14 16 14 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.24 -9.95 5.61 99.48 0.56 -9.39 16 17 C -0.08 -3.43 3.95 30.58 0.12 -3.31 16 18 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 19 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.05 1.58 4.81 -2.39 -0.01 1.57 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.05 6.43 -2.39 -0.02 2.04 16 28 H 0.04 1.94 4.83 -2.39 -0.01 1.93 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.60 239.12 5.36 -61.24 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.88 Total: 5.78 kcal Atomic # 6 Polarization: -61.17 SS G_CDS: 2.38 Total: -58.79 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.29 Total: -61.37 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 1.81 Total: 53.14 kcal Total: -66.60 5.36 -61.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143892280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.095 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds