Wall clock time and date at job start Mon Mar 30 2020 01:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.35472 * 304.81936 * 4 3 2 6 6 C 1.52959 * 109.41607 * 64.64329 * 4 3 2 7 7 C 1.53226 * 109.40610 * 183.70402 * 6 4 3 8 8 C 1.51264 * 108.53732 * 305.37215 * 7 6 4 9 9 C 1.37880 * 120.85298 * 231.61877 * 8 7 6 10 10 N 1.31517 * 120.00171 * 164.41943 * 9 8 7 11 11 Si 1.86802 * 119.99653 * 344.42283 * 9 8 7 12 12 H 1.48498 * 109.47345 * 354.63424 * 11 9 8 13 13 H 1.48508 * 109.46987 * 114.63594 * 11 9 8 14 14 H 1.48504 * 109.46754 * 234.63181 * 11 9 8 15 15 C 1.51273 * 118.29975 * 51.34818 * 8 7 6 16 16 C 1.52966 * 109.41406 * 184.99622 * 4 3 2 17 17 H 1.09006 * 109.47299 * 300.00283 * 1 2 3 18 18 H 1.09005 * 109.47283 * 60.00255 * 1 2 3 19 19 H 1.09000 * 109.47268 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47228 * 239.99801 * 2 1 3 21 21 H 1.08998 * 109.46715 * 119.99399 * 2 1 3 22 22 H 1.08995 * 109.47791 * 59.99772 * 3 2 1 23 23 H 1.09005 * 109.46871 * 299.99997 * 3 2 1 24 24 H 1.08996 * 109.48108 * 303.68712 * 6 4 3 25 25 H 1.09004 * 109.48093 * 63.72187 * 6 4 3 26 26 H 1.09002 * 109.62861 * 185.65958 * 7 6 4 27 27 H 1.08993 * 109.62493 * 65.08641 * 7 6 4 28 28 H 0.97001 * 119.99825 * 180.02562 * 10 9 8 29 29 H 1.09000 * 109.62701 * 68.36522 * 15 8 7 30 30 H 1.09007 * 109.62607 * 188.74200 * 15 8 7 31 31 H 1.09000 * 109.47887 * 56.31416 * 16 4 3 32 32 H 1.09004 * 109.49251 * 296.28086 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9308 0.8554 0.8452 6 6 4.0790 0.8245 -1.3027 7 6 5.6084 0.7398 -1.2627 8 6 6.1588 2.1179 -0.9697 9 6 7.1339 2.6747 -1.7699 10 7 7.3842 3.9640 -1.7009 11 14 8.0993 1.5977 -2.9521 12 1 7.7220 0.1761 -2.7474 13 1 7.7903 1.9957 -4.3491 14 1 9.5531 1.7654 -2.6997 15 6 5.6077 2.8723 0.2201 16 6 4.0783 2.8797 0.1263 17 1 -0.3634 0.5139 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 1.8933 -0.5138 -0.8899 21 1 1.8932 -0.5137 0.8900 22 1 1.6767 1.9564 0.8899 23 1 1.6766 1.9563 -0.8900 24 1 3.6623 -0.1761 -1.4175 25 1 3.7711 1.4454 -2.1440 26 1 5.9813 0.3940 -2.2268 27 1 5.9163 0.0483 -0.4785 28 1 8.0700 4.3557 -2.2642 29 1 5.9156 2.3781 1.1415 30 1 5.9829 3.8957 0.2105 31 1 3.6612 3.3356 1.0242 32 1 3.7705 3.4522 -0.7487 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147915664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:05 Heat of formation + Delta-G solvation = -59.904240 kcal Electronic energy + Delta-G solvation = -11382.654207 eV Core-core repulsion = 9533.670698 eV Total energy + Delta-G solvation = -1848.983508 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.17117 -35.74083 -33.70497 -31.47681 -30.37199 -26.62190 -23.87560 -22.92421 -21.67935 -20.63532 -18.02972 -16.40296 -15.87256 -15.52701 -14.91067 -14.64609 -14.24271 -14.11113 -13.59303 -13.33397 -12.95144 -12.74338 -12.64327 -12.28742 -12.00720 -11.73943 -11.61145 -11.37944 -11.26261 -11.23635 -10.64744 -10.38861 -10.25533 -8.18406 -6.05336 1.35828 1.40846 1.51399 2.41998 3.07678 4.01337 4.08932 4.23978 4.37978 4.56514 4.67482 4.80599 4.88119 4.95981 5.01858 5.08493 5.10878 5.14847 5.23348 5.29617 5.38133 5.39590 5.51783 5.61172 5.64638 5.65308 5.73614 5.81699 5.97845 6.42021 6.98900 7.49045 8.93690 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.063598 B = 0.011281 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.158092 B = 2481.479747 C = 2781.127000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.070 4.070 5 H 0.055 0.945 6 C -0.097 4.097 7 C -0.021 4.021 8 C -0.501 4.501 9 C 0.018 3.982 10 N -0.930 5.930 11 Si 0.936 3.064 12 H -0.246 1.246 13 H -0.282 1.282 14 H -0.287 1.287 15 C 0.001 3.999 16 C -0.095 4.095 17 H 0.056 0.944 18 H 0.052 0.948 19 H 0.062 0.938 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.029 0.971 27 H 0.016 0.984 28 H 0.261 0.739 29 H -0.001 1.001 30 H 0.018 0.982 31 H 0.044 0.956 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 -7.427 1.652 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.089 4.089 5 H 0.073 0.927 6 C -0.135 4.135 7 C -0.058 4.058 8 C -0.521 4.521 9 C -0.180 4.180 10 N -0.570 5.570 11 Si 0.761 3.239 12 H -0.169 1.169 13 H -0.208 1.208 14 H -0.213 1.213 15 C -0.036 4.036 16 C -0.133 4.133 17 H 0.075 0.925 18 H 0.071 0.929 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.840 -7.291 1.584 12.349 hybrid contribution 1.015 0.186 -0.616 1.202 sum -8.825 -7.105 0.968 11.371 Atomic orbital electron populations 1.21754 0.94922 1.01977 1.01832 1.21569 0.96427 0.96181 1.01990 1.21628 0.94088 0.97443 1.01412 1.20934 0.94850 0.95572 0.97520 0.92695 1.21553 0.96210 0.98911 0.96789 1.19835 0.94431 0.94932 0.96640 1.20700 1.19378 1.00632 1.11345 1.25661 0.98068 0.95550 0.98749 1.70061 1.33272 1.11909 1.41797 0.85862 0.78258 0.81102 0.78652 1.16912 1.20845 1.21333 1.19412 0.93165 0.96529 0.94519 1.21505 0.96920 0.96396 0.98505 0.92530 0.92870 0.91924 0.92072 0.92108 0.92003 0.92802 0.91911 0.94432 0.95269 0.96594 0.92949 0.98301 0.96334 0.93736 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.24 16 2 C -0.12 -3.08 5.68 30.59 0.17 -2.90 16 3 C -0.11 -3.21 4.68 30.59 0.14 -3.07 16 4 C -0.07 -2.64 2.09 -10.82 -0.02 -2.66 16 5 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 6 C -0.10 -3.87 5.05 30.66 0.15 -3.71 16 7 C -0.02 -0.97 5.47 30.10 0.16 -0.81 16 8 C -0.50 -27.44 5.44 -16.17 -0.09 -27.53 16 9 C 0.02 1.00 5.43 84.65 0.46 1.46 16 10 N -0.93 -56.57 12.81 21.45 0.27 -56.29 16 11 Si 0.94 44.15 27.63 68.60 1.90 46.05 16 12 H -0.25 -10.82 6.14 99.48 0.61 -10.21 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 15 C 0.00 0.06 5.99 30.11 0.18 0.24 16 16 C -0.10 -4.20 5.22 30.66 0.16 -4.04 16 17 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 18 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 19 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.06 1.55 6.47 -2.39 -0.02 1.53 16 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 23 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.06 2.13 6.38 -2.39 -0.02 2.11 16 25 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 26 H 0.03 1.34 5.01 -2.39 -0.01 1.32 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.02 1.06 7.10 -2.38 -0.02 1.05 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -60.51 246.74 5.17 -55.33 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 0.96 Total: 0.17 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 2.04 Total: -45.26 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.27 Total: -56.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Total: -60.51 5.17 -55.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147915664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.570 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds