Wall clock time and date at job start Mon Mar 30 2020 01:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47461 * 120.00029 * 2 1 3 5 5 H 1.09005 * 109.46617 * 300.00243 * 4 2 1 6 6 C 1.53001 * 109.46896 * 59.99734 * 4 2 1 7 7 C 1.50697 * 109.47022 * 59.56157 * 6 4 2 8 8 H 1.07995 * 120.00363 * 4.86763 * 7 6 4 9 9 C 1.37876 * 119.99663 * 184.87193 * 7 6 4 10 10 N 1.31520 * 119.99658 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00380 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47037 * 90.00283 * 11 9 7 13 13 H 1.48504 * 109.46951 * 210.00353 * 11 9 7 14 14 H 1.48498 * 109.46844 * 330.00101 * 11 9 7 15 15 C 1.52991 * 109.47354 * 179.97438 * 4 2 1 16 16 C 1.53004 * 117.50006 * 106.04996 * 15 4 2 17 17 C 1.53005 * 117.50123 * 174.70684 * 15 4 2 18 18 H 1.08995 * 109.47403 * 59.99900 * 1 2 3 19 19 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46883 * 300.00135 * 1 2 3 21 21 H 1.09002 * 109.46947 * 240.00378 * 2 1 3 22 22 H 1.08992 * 109.47645 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46883 * 299.99917 * 3 2 1 24 24 H 1.09005 * 109.47072 * 59.99586 * 3 2 1 25 25 H 1.09000 * 109.46714 * 179.56143 * 6 4 2 26 26 H 1.09001 * 109.47129 * 299.55645 * 6 4 2 27 27 H 0.97005 * 119.99540 * 179.97438 * 10 9 7 28 28 H 1.09004 * 115.55406 * 320.37880 * 15 4 2 29 29 H 1.09008 * 117.49780 * 215.00713 * 16 15 4 30 30 H 1.08996 * 117.49852 * 0.02562 * 16 15 4 31 31 H 1.08997 * 117.49502 * 359.97438 * 17 15 4 32 32 H 1.08998 * 117.49573 * 144.99817 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 2.0234 -2.8709 0.0133 8 1 2.7026 -2.3702 -0.6606 9 6 1.6075 -4.1574 -0.2570 10 7 2.0385 -4.7748 -1.3354 11 14 0.4331 -5.0239 0.9089 12 1 -0.9666 -4.7499 0.4957 13 1 0.6842 -6.4870 0.8674 14 1 0.6484 -4.5238 2.2904 15 6 3.5700 -0.7218 1.2489 16 6 4.2771 0.2200 2.2257 17 6 4.2766 -1.2891 2.4817 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4426 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.8999 -2.6798 2.1352 26 1 0.4401 -2.1637 1.2572 27 1 1.7462 -5.6800 -1.5254 28 1 4.0399 -0.8865 0.2792 29 1 5.2121 0.6750 1.8985 30 1 3.6522 0.8397 2.8688 31 1 3.6514 -1.6616 3.2932 32 1 5.2113 -1.8270 2.3230 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167077679.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:49 Heat of formation + Delta-G solvation = -4.229898 kcal Electronic energy + Delta-G solvation = -11503.178726 eV Core-core repulsion = 9656.609438 eV Total energy + Delta-G solvation = -1846.569288 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.10714 -34.53513 -32.54390 -29.84675 -26.57567 -25.25543 -21.97849 -21.53025 -20.18383 -18.62882 -16.41459 -15.05525 -14.30439 -14.15533 -13.50250 -13.24199 -12.58546 -12.27746 -11.88558 -11.64946 -11.36899 -11.00447 -10.88197 -10.65197 -10.48502 -10.14862 -9.95425 -9.90498 -9.64978 -9.25668 -8.89508 -8.72953 -8.44043 -5.95644 -3.90465 3.34295 3.42414 3.46582 4.51498 4.52886 5.28903 5.38388 5.54227 5.61039 5.73671 5.78066 5.90627 6.08561 6.18755 6.24896 6.34340 6.41074 6.46832 6.49720 6.65197 6.69018 6.76277 6.90453 6.99501 7.07520 7.30464 7.39120 7.51442 7.91621 8.65013 9.10890 9.68478 11.17865 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.037114 B = 0.014992 C = 0.012764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.259787 B = 1867.250561 C = 2193.205043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.037 4.037 5 H 0.042 0.958 6 C -0.011 4.011 7 C -0.499 4.499 8 H 0.075 0.925 9 C 0.064 3.936 10 N -0.907 5.907 11 Si 0.873 3.127 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.267 1.267 15 C -0.105 4.105 16 C -0.201 4.201 17 C -0.177 4.177 18 H 0.041 0.959 19 H 0.066 0.934 20 H 0.039 0.961 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.260 0.740 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 8.894 5.222 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.055 4.055 5 H 0.061 0.939 6 C -0.048 4.048 7 C -0.537 4.537 8 H 0.093 0.907 9 C -0.136 4.136 10 N -0.547 5.547 11 Si 0.701 3.299 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.192 1.192 15 C -0.123 4.123 16 C -0.238 4.238 17 C -0.214 4.214 18 H 0.060 0.940 19 H 0.085 0.915 20 H 0.058 0.942 21 H 0.102 0.898 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.069 8.728 5.130 10.124 hybrid contribution -0.582 -0.677 0.560 1.054 sum -0.513 8.051 5.690 9.872 Atomic orbital electron populations 1.21812 0.96318 1.02209 0.99598 1.21029 0.94967 0.94175 0.99908 1.21880 1.00947 0.97214 1.00053 1.20638 0.91525 0.97618 0.95756 0.93950 1.19674 0.95571 0.91816 0.97753 1.21095 1.27746 0.98437 1.06440 0.90718 1.25016 0.96226 0.97457 0.94938 1.69917 1.45506 1.13162 1.26162 0.86878 0.81780 0.78747 0.82455 1.20509 1.21666 1.19219 1.22140 0.95205 1.00722 0.94281 1.23032 1.02332 0.93070 1.05356 1.22774 1.02395 0.94806 1.01440 0.93978 0.91515 0.94221 0.89793 0.92819 0.93946 0.93883 0.96962 0.96761 0.93012 0.88069 0.90016 0.89836 0.89507 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.84 37.16 0.33 -2.19 16 2 C -0.08 -1.53 2.25 -90.62 -0.20 -1.74 16 3 C -0.14 -2.22 8.94 37.16 0.33 -1.89 16 4 C -0.04 -0.73 1.84 -90.62 -0.17 -0.89 16 5 H 0.04 0.79 7.95 -51.93 -0.41 0.37 16 6 C -0.01 -0.26 3.36 -27.88 -0.09 -0.35 16 7 C -0.50 -13.71 8.30 -34.44 -0.29 -13.99 16 8 H 0.07 2.20 6.38 -52.49 -0.33 1.86 16 9 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 10 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 11 Si 0.87 21.91 27.38 -169.99 -4.65 17.25 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.27 -6.50 6.68 56.52 0.38 -6.13 16 15 C -0.11 -1.98 3.10 -90.62 -0.28 -2.26 16 16 C -0.20 -3.13 9.89 -26.69 -0.26 -3.39 16 17 C -0.18 -3.10 9.81 -26.69 -0.26 -3.36 16 18 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 19 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 20 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.08 1.79 6.69 -51.93 -0.35 1.44 16 22 H 0.05 0.82 6.97 -51.93 -0.36 0.45 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.01 0.30 7.04 -51.93 -0.37 -0.07 16 26 H 0.01 0.34 5.61 -51.93 -0.29 0.04 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 28 H 0.10 2.05 7.65 -51.93 -0.40 1.66 16 29 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 31 H 0.09 1.52 7.94 -51.93 -0.41 1.11 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 251.94 15.07 3.80 3.80 Total: -1.00 -28.97 251.94 -6.45 -35.42 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.37 Total: -1.02 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -0.99 Total: -28.33 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.65 Total: 17.25 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.97 -6.45 -35.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167077679.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.193 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds