Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.53002 * 109.47461 * 120.00029 * 2 1 3 5 5 H 1.09005 * 109.46617 * 300.00243 * 4 2 1 6 6 C 1.53001 * 109.46896 * 59.99734 * 4 2 1 7 7 C 1.50697 * 109.47022 * 59.56157 * 6 4 2 8 8 H 1.07995 * 120.00363 * 4.86763 * 7 6 4 9 9 C 1.37876 * 119.99663 * 184.87193 * 7 6 4 10 10 N 1.31520 * 119.99658 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00380 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47037 * 90.00283 * 11 9 7 13 13 H 1.48504 * 109.46951 * 210.00353 * 11 9 7 14 14 H 1.48498 * 109.46844 * 330.00101 * 11 9 7 15 15 C 1.52991 * 109.47354 * 179.97438 * 4 2 1 16 16 C 1.53004 * 117.50006 * 106.04996 * 15 4 2 17 17 C 1.53005 * 117.50123 * 174.70684 * 15 4 2 18 18 H 1.08995 * 109.47403 * 59.99900 * 1 2 3 19 19 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46883 * 300.00135 * 1 2 3 21 21 H 1.09002 * 109.46947 * 240.00378 * 2 1 3 22 22 H 1.08992 * 109.47645 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46883 * 299.99917 * 3 2 1 24 24 H 1.09005 * 109.47072 * 59.99586 * 3 2 1 25 25 H 1.09000 * 109.46714 * 179.56143 * 6 4 2 26 26 H 1.09001 * 109.47129 * 299.55645 * 6 4 2 27 27 H 0.97005 * 119.99540 * 179.97438 * 10 9 7 28 28 H 1.09004 * 115.55406 * 320.37880 * 15 4 2 29 29 H 1.09008 * 117.49780 * 215.00713 * 16 15 4 30 30 H 1.08996 * 117.49852 * 0.02562 * 16 15 4 31 31 H 1.08997 * 117.49502 * 359.97438 * 17 15 4 32 32 H 1.08998 * 117.49573 * 144.99817 * 17 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5301 -2.1637 1.2492 7 6 2.0234 -2.8709 0.0133 8 1 2.7026 -2.3702 -0.6606 9 6 1.6075 -4.1574 -0.2570 10 7 2.0385 -4.7748 -1.3354 11 14 0.4331 -5.0239 0.9089 12 1 -0.9666 -4.7499 0.4957 13 1 0.6842 -6.4870 0.8674 14 1 0.6484 -4.5238 2.2904 15 6 3.5700 -0.7218 1.2489 16 6 4.2771 0.2200 2.2257 17 6 4.2766 -1.2891 2.4817 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4426 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.8999 -2.6798 2.1352 26 1 0.4401 -2.1637 1.2572 27 1 1.7462 -5.6800 -1.5254 28 1 4.0399 -0.8865 0.2792 29 1 5.2121 0.6750 1.8985 30 1 3.6522 0.8397 2.8688 31 1 3.6514 -1.6616 3.2932 32 1 5.2113 -1.8270 2.3230 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167077679.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -20.184514 kcal Electronic energy + Delta-G solvation = -11503.870570 eV Core-core repulsion = 9656.609438 eV Total energy + Delta-G solvation = -1847.261132 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.61100 -35.99179 -34.62778 -31.68421 -27.94112 -27.08257 -23.69304 -22.94615 -21.62024 -20.36973 -18.44999 -16.49663 -16.19976 -15.82650 -15.02660 -14.89362 -14.33189 -13.96505 -13.46407 -13.16140 -12.89217 -12.53859 -12.45907 -12.23246 -12.11444 -11.78660 -11.69311 -11.49814 -11.41415 -10.79275 -10.69393 -10.58733 -10.33848 -8.19059 -6.17296 1.35032 1.37130 1.48156 2.40903 3.10598 3.20564 3.87245 4.11568 4.24092 4.32862 4.41570 4.52001 4.74787 4.87282 4.89670 4.93500 4.99057 5.09006 5.11936 5.15065 5.27717 5.33085 5.38383 5.43313 5.54092 5.68036 5.69090 5.76095 5.91400 6.44921 6.89277 7.44435 8.97701 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.037114 B = 0.014992 C = 0.012764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.259787 B = 1867.250561 C = 2193.205043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.134 4.134 4 C -0.033 4.033 5 H 0.066 0.934 6 C -0.010 4.010 7 C -0.488 4.488 8 H 0.039 0.961 9 C 0.000 4.000 10 N -0.957 5.957 11 Si 0.937 3.063 12 H -0.270 1.270 13 H -0.290 1.290 14 H -0.251 1.251 15 C -0.133 4.133 16 C -0.161 4.161 17 C -0.189 4.189 18 H 0.055 0.945 19 H 0.037 0.963 20 H 0.063 0.937 21 H 0.042 0.958 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.009 0.991 26 H 0.018 0.982 27 H 0.260 0.740 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 10.616 7.269 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.191 4.191 4 C -0.051 4.051 5 H 0.084 0.916 6 C -0.047 4.047 7 C -0.527 4.527 8 H 0.058 0.942 9 C -0.196 4.196 10 N -0.600 5.600 11 Si 0.762 3.238 12 H -0.195 1.195 13 H -0.217 1.217 14 H -0.175 1.175 15 C -0.151 4.151 16 C -0.198 4.198 17 C -0.226 4.226 18 H 0.074 0.926 19 H 0.056 0.944 20 H 0.082 0.918 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.616 10.470 7.191 12.717 hybrid contribution -0.306 -1.172 -0.132 1.218 sum -0.921 9.299 7.059 11.711 Atomic orbital electron populations 1.21785 0.95518 1.00903 1.01522 1.20973 0.95666 0.95943 0.97616 1.21772 1.00939 0.94803 1.01626 1.20580 0.92163 0.95213 0.97147 0.91606 1.19649 0.95639 0.94178 0.95204 1.21330 1.26073 0.98240 1.07016 0.94242 1.25892 0.98405 0.98590 0.96668 1.70073 1.47733 1.13675 1.28498 0.85850 0.79707 0.77338 0.80905 1.19540 1.21675 1.17500 1.21987 0.94793 1.04521 0.93830 1.23088 1.02420 0.91830 1.02482 1.22854 1.02211 0.96994 1.00523 0.92613 0.94376 0.91762 0.93980 0.92813 0.92811 0.91823 0.97311 0.96408 0.93092 0.90943 0.88194 0.87776 0.89434 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.84 71.98 0.64 -4.09 16 2 C -0.08 -3.03 2.25 -10.79 -0.02 -3.06 16 3 C -0.13 -3.80 8.94 71.98 0.64 -3.15 16 4 C -0.03 -1.24 1.84 -10.80 -0.02 -1.26 16 5 H 0.07 2.21 7.95 -2.38 -0.02 2.19 16 6 C -0.01 -0.44 3.36 29.85 0.10 -0.34 16 7 C -0.49 -27.58 8.30 25.60 0.21 -27.37 16 8 H 0.04 2.46 6.38 -2.91 -0.02 2.44 16 9 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 10 N -0.96 -60.88 13.96 21.45 0.30 -60.58 16 11 Si 0.94 45.36 27.38 68.60 1.88 47.23 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.25 -11.40 6.68 99.48 0.66 -10.73 16 15 C -0.13 -4.88 3.10 -10.79 -0.03 -4.91 16 16 C -0.16 -4.49 9.89 30.62 0.30 -4.18 16 17 C -0.19 -6.31 9.81 30.62 0.30 -6.01 16 18 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 19 H 0.04 1.48 6.44 -2.39 -0.02 1.46 16 20 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 21 H 0.04 1.86 6.69 -2.39 -0.02 1.85 16 22 H 0.05 1.51 6.97 -2.39 -0.02 1.49 16 23 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 25 H 0.01 0.41 7.04 -2.39 -0.02 0.39 16 26 H 0.02 0.82 5.61 -2.39 -0.01 0.80 16 27 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 28 H 0.07 3.05 7.65 -2.38 -0.02 3.03 16 29 H 0.10 2.44 8.14 -2.38 -0.02 2.43 16 30 H 0.10 2.52 8.08 -2.39 -0.02 2.50 16 31 H 0.09 2.90 7.94 -2.39 -0.02 2.88 16 32 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -63.49 251.94 5.78 -57.72 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 1.02 Total: 9.57 kcal Atomic # 6 Polarization: -56.52 SS G_CDS: 2.58 Total: -53.94 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.30 Total: -60.58 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.23 kcal Total: -63.49 5.78 -57.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167077679.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.532 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds