Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47030 * 2 1 4 4 C 1.53001 * 109.47324 * 239.99764 * 2 1 3 5 5 C 1.53004 * 109.47252 * 119.99431 * 2 1 3 6 6 C 1.53000 * 109.46579 * 67.73497 * 5 2 1 7 7 C 1.50699 * 115.55168 * 300.35120 * 6 5 2 8 8 H 1.07999 * 119.99919 * 357.79222 * 7 6 5 9 9 C 1.37882 * 119.99877 * 177.79365 * 7 6 5 10 10 N 1.31512 * 120.00146 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99921 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47524 * 59.99419 * 11 9 7 13 13 H 1.48496 * 109.47063 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46876 * 299.99759 * 11 9 7 15 15 C 1.53008 * 117.49487 * 154.68201 * 6 5 2 16 16 C 1.52996 * 60.03090 * 252.49753 * 15 6 5 17 17 H 1.09001 * 109.47405 * 269.59741 * 1 2 3 18 18 H 1.09001 * 109.47343 * 29.59851 * 1 2 3 19 19 H 1.09005 * 109.47083 * 149.60113 * 1 2 3 20 20 H 1.09002 * 109.46993 * 180.02562 * 3 2 1 21 21 H 1.09003 * 109.47129 * 299.99592 * 3 2 1 22 22 H 1.08996 * 109.47274 * 59.99761 * 3 2 1 23 23 H 1.08995 * 109.47057 * 300.00203 * 4 2 1 24 24 H 1.09003 * 109.46671 * 60.00004 * 4 2 1 25 25 H 1.09000 * 109.46887 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47180 * 307.73604 * 5 2 1 27 27 H 1.08997 * 109.46871 * 187.73223 * 5 2 1 28 28 H 0.97001 * 120.00572 * 180.02562 * 10 9 7 29 29 H 1.09000 * 117.49757 * 0.02562 * 15 6 5 30 30 H 1.09000 * 117.49493 * 145.00042 * 15 6 5 31 31 H 1.09010 * 117.49984 * 107.50271 * 16 15 6 32 32 H 1.08997 * 117.50448 * 252.51793 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 6 1.6946 -2.2087 1.1561 7 6 0.2265 -2.5293 1.0424 8 1 -0.5034 -1.7337 1.0670 9 6 -0.1848 -3.8384 0.9070 10 7 0.7041 -4.8071 0.8765 11 14 -2.0045 -4.2357 0.7653 12 1 -2.5678 -3.5572 -0.4294 13 1 -2.1814 -5.7038 0.6297 14 1 -2.7108 -3.7618 1.9827 15 6 2.5733 -3.1882 1.9370 16 6 2.6766 -3.1173 0.4121 17 1 -0.3634 -0.0072 1.0276 18 1 -0.3634 0.8936 -0.5076 19 1 -0.3633 -0.8864 -0.5200 20 1 3.1299 1.4425 -0.0005 21 1 1.6766 1.9564 -0.8900 22 1 1.6766 1.9564 0.8899 23 1 1.6767 -1.7489 -1.2492 24 1 1.6766 -0.2074 -2.1392 25 1 3.1300 -0.7217 -1.2489 26 1 1.5681 -0.2933 2.1339 27 1 3.1211 -0.6029 1.3211 28 1 0.4149 -5.7281 0.7809 29 1 3.3970 -2.7727 2.5174 30 1 2.0894 -4.0644 2.3684 31 1 3.5686 -2.6552 -0.0110 32 1 2.2604 -3.9467 -0.1596 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000202953018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = 0.889457 kcal Electronic energy + Delta-G solvation = -11847.396932 eV Core-core repulsion = 10001.049636 eV Total energy + Delta-G solvation = -1846.347296 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.71804 -36.46723 -33.48717 -28.97449 -28.01318 -27.77743 -26.71149 -22.52461 -21.08220 -19.41250 -17.97486 -16.75714 -15.52535 -15.19799 -15.10032 -14.58516 -14.10185 -13.61733 -13.19561 -12.88865 -12.85329 -12.50847 -12.33807 -12.28209 -11.90549 -11.84266 -11.56510 -11.46197 -11.14698 -10.96772 -10.58280 -9.92965 -9.86053 -7.91787 -6.00356 1.44308 1.44904 1.51329 2.47403 3.13527 3.93184 4.18639 4.23518 4.32744 4.69668 4.77231 4.86927 4.92334 5.00428 5.05944 5.07717 5.13344 5.20839 5.30017 5.34949 5.39428 5.44623 5.60356 5.66759 5.72777 5.83041 5.93412 6.09784 6.28404 6.57764 7.04361 7.55679 9.02188 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.042581 B = 0.016978 C = 0.013841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.409449 B = 1648.764123 C = 2022.549022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.056 4.056 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.061 4.061 6 C 0.022 3.978 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.006 3.994 10 N -0.906 5.906 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.293 1.293 14 H -0.274 1.274 15 C -0.208 4.208 16 C -0.179 4.179 17 H 0.045 0.955 18 H 0.052 0.948 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.252 0.748 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 8.673 -2.171 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.188 4.188 5 C -0.098 4.098 6 C 0.022 3.978 7 C -0.523 4.523 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.546 5.546 11 Si 0.772 3.228 12 H -0.195 1.195 13 H -0.220 1.220 14 H -0.199 1.199 15 C -0.246 4.246 16 C -0.217 4.217 17 H 0.064 0.936 18 H 0.071 0.929 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.658 8.478 -2.190 8.781 hybrid contribution -0.708 -1.014 0.102 1.240 sum -0.050 7.464 -2.089 7.751 Atomic orbital electron populations 1.22058 0.95136 1.00431 1.00871 1.20337 0.95628 0.94913 0.94711 1.21875 1.00692 0.94609 1.01859 1.21860 0.99674 1.00598 0.96668 1.21134 0.98143 0.93618 0.96941 1.19165 0.91178 0.88601 0.98892 1.21462 0.91781 0.92511 1.46572 0.89787 1.25748 1.00732 0.96836 0.95833 1.70197 1.33677 0.99535 1.51198 0.85803 0.81713 0.76504 0.78769 1.19533 1.21952 1.19898 1.22721 1.02561 1.04854 0.94444 1.22675 0.99958 1.05045 0.94005 0.93625 0.92897 0.93218 0.92761 0.91879 0.92525 0.93474 0.92882 0.93723 0.93274 0.93778 0.93880 0.92519 0.91056 0.92630 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.17 71.98 0.52 -4.09 16 2 C -0.06 -1.95 0.79 -52.18 -0.04 -1.99 16 3 C -0.13 -3.63 8.30 71.98 0.60 -3.03 16 4 C -0.13 -4.71 7.20 71.98 0.52 -4.19 16 5 C -0.06 -2.45 4.27 30.60 0.13 -2.32 16 6 C 0.02 1.07 1.38 -52.90 -0.07 1.00 16 7 C -0.49 -25.49 7.33 25.60 0.19 -25.30 16 8 H 0.08 4.20 4.37 -2.91 -0.01 4.19 16 9 C 0.01 0.35 5.28 84.66 0.45 0.79 16 10 N -0.91 -51.76 8.59 21.45 0.18 -51.58 16 11 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 C -0.21 -10.64 9.38 30.60 0.29 -10.35 16 16 C -0.18 -8.98 7.28 30.62 0.22 -8.76 16 17 H 0.04 1.70 6.53 -2.39 -0.02 1.68 16 18 H 0.05 1.58 7.81 -2.39 -0.02 1.56 16 19 H 0.05 2.03 6.23 -2.38 -0.01 2.02 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 2.03 5.82 -2.39 -0.01 2.02 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.51 7.97 -2.39 -0.02 1.49 16 26 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 27 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 4.08 6.48 -2.39 -0.02 4.07 16 31 H 0.06 2.54 7.77 -2.38 -0.02 2.52 16 32 H 0.08 4.64 6.09 -2.39 -0.01 4.62 16 Total: -1.00 -56.66 241.90 6.07 -50.58 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.07 Total: 13.93 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 2.79 Total: -58.24 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.18 Total: -51.58 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -56.66 6.07 -50.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000202953018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.472 kcal (2) G-P(sol) polarization free energy of solvation -56.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds