Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 C 1.53004 * 109.46775 * 119.99402 * 2 1 3 5 5 H 1.08993 * 110.82117 * 298.11731 * 4 2 1 6 6 C 1.54894 * 110.75410 * 61.46079 * 4 2 1 7 7 C 1.54266 * 104.31305 * 156.31914 * 6 4 2 8 8 C 1.53869 * 106.60031 * 336.32486 * 7 6 4 9 9 H 1.08995 * 110.04023 * 119.33232 * 8 7 6 10 10 C 1.50705 * 110.03024 * 240.71754 * 8 7 6 11 11 H 1.07999 * 120.00434 * 118.54185 * 10 8 7 12 12 C 1.37883 * 119.99691 * 298.53861 * 10 8 7 13 13 N 1.31510 * 119.99984 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99905 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46620 * 60.00494 * 14 12 10 16 16 H 1.48497 * 109.47059 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47327 * 300.00698 * 14 12 10 18 18 C 1.54266 * 106.59800 * 359.97438 * 8 7 6 19 19 H 1.08992 * 109.47369 * 300.00108 * 1 2 3 20 20 H 1.09006 * 109.46949 * 60.00560 * 1 2 3 21 21 H 1.09006 * 109.47198 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47455 * 239.99353 * 2 1 3 23 23 H 1.09000 * 109.47009 * 299.99917 * 3 2 1 24 24 H 1.09004 * 109.47460 * 59.99532 * 3 2 1 25 25 H 1.09004 * 109.47709 * 179.97438 * 3 2 1 26 26 H 1.09002 * 110.48891 * 37.57340 * 6 4 2 27 27 H 1.08998 * 110.48494 * 275.06427 * 6 4 2 28 28 H 1.09001 * 110.03084 * 95.60669 * 7 6 4 29 29 H 1.08996 * 110.03108 * 216.98559 * 7 6 4 30 30 H 0.96998 * 120.00289 * 179.97438 * 13 12 10 31 31 H 1.09005 * 110.48526 * 142.29451 * 18 8 7 32 32 H 1.09007 * 110.48724 * 264.79935 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.7163 -0.2056 2.1535 6 6 1.5704 -2.1972 1.2612 7 6 2.5972 -2.9168 2.1599 8 6 3.8786 -2.0655 2.1321 9 1 4.1211 -1.7226 3.1379 10 6 5.0220 -2.8720 1.5723 11 1 5.5161 -2.5521 0.6668 12 6 5.4374 -4.0182 2.2163 13 7 4.8355 -4.4080 3.3187 14 14 6.8543 -5.0183 1.5220 15 1 8.0753 -4.1749 1.4675 16 1 7.1032 -6.1948 2.3932 17 1 6.5102 -5.4803 0.1533 18 6 3.5861 -0.8586 1.2169 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.5890 -2.6116 0.2532 27 1 0.5699 -2.2758 1.6865 28 1 2.2172 -2.9864 3.1792 29 1 2.8016 -3.9135 1.7691 30 1 5.1274 -5.2145 3.7715 31 1 4.0568 0.0421 1.6112 32 1 3.9327 -1.0561 0.2025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204031811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -41.918537 kcal Electronic energy + Delta-G solvation = -11370.533892 eV Core-core repulsion = 9522.330302 eV Total energy + Delta-G solvation = -1848.203590 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.94467 -34.23642 -31.88558 -28.30886 -27.13771 -26.36328 -23.80770 -20.82561 -19.00702 -18.72365 -16.03156 -14.79755 -14.59144 -13.99751 -13.84543 -12.81661 -12.47165 -12.21410 -11.87246 -11.82208 -11.24277 -11.04347 -10.93377 -10.60279 -10.41923 -10.31500 -9.73257 -9.68520 -9.62894 -9.36779 -8.96005 -8.58446 -8.27208 -5.92280 -3.94862 3.36041 3.40527 3.43169 4.50298 5.23132 5.28989 5.33854 5.42040 5.85136 5.88977 5.97415 6.01204 6.07609 6.12788 6.22993 6.43265 6.52690 6.58045 6.66843 6.78511 6.85774 6.98595 7.03231 7.18665 7.44806 7.52882 7.83449 8.03793 8.10833 8.58840 9.08968 9.68202 11.17012 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.069364 B = 0.010319 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.572786 B = 2712.818481 C = 2882.618549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.089 4.089 5 H 0.062 0.938 6 C -0.118 4.118 7 C -0.091 4.091 8 C 0.043 3.957 9 H 0.023 0.977 10 C -0.510 4.510 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.891 5.891 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.107 4.107 19 H 0.049 0.951 20 H 0.044 0.956 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 6.700 -4.766 10.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.108 4.108 5 H 0.081 0.919 6 C -0.156 4.156 7 C -0.130 4.130 8 C 0.024 3.976 9 H 0.041 0.959 10 C -0.549 4.549 11 H 0.071 0.929 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.715 3.285 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.144 4.144 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.222 6.547 -4.620 10.145 hybrid contribution 0.789 -0.686 -0.274 1.081 sum -5.433 5.861 -4.894 9.371 Atomic orbital electron populations 1.21840 0.96159 1.01511 1.00661 1.21135 0.94848 0.95812 0.98984 1.21825 1.01403 0.96319 1.00606 1.22245 0.97192 0.95488 0.95842 0.91946 1.22473 0.98030 0.95143 0.99959 1.22027 0.94768 0.99869 0.96309 1.19248 0.93114 0.90679 0.94519 0.95917 1.21265 1.15774 1.08185 1.09627 0.92905 1.24992 0.96611 0.97616 0.94983 1.69980 1.41190 1.24149 1.17625 0.86745 0.83117 0.79704 0.78930 1.20386 1.21397 1.20370 1.22570 0.92617 0.98736 1.00503 0.93192 0.93645 0.92633 0.91552 0.93666 0.93199 0.92432 0.92955 0.93999 0.94723 0.92084 0.93165 0.94166 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.99 37.16 0.33 -1.58 16 2 C -0.09 -1.36 2.44 -90.62 -0.22 -1.58 16 3 C -0.14 -1.96 9.03 37.16 0.34 -1.63 16 4 C -0.09 -1.63 2.45 -88.42 -0.22 -1.84 16 5 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.12 -2.33 5.23 -25.07 -0.13 -2.46 16 7 C -0.09 -2.22 5.55 -25.62 -0.14 -2.37 16 8 C 0.04 1.10 2.85 -90.65 -0.26 0.84 16 9 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 10 C -0.51 -14.39 8.34 -34.44 -0.29 -14.68 16 11 H 0.05 1.47 7.55 -52.49 -0.40 1.07 16 12 C 0.06 1.68 5.07 -17.82 -0.09 1.59 16 13 N -0.89 -26.29 12.33 55.43 0.68 -25.61 16 14 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.11 -2.27 4.95 -24.87 -0.12 -2.39 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.74 7.22 -51.93 -0.37 0.37 16 22 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.82 7.38 -51.93 -0.38 0.43 16 26 H 0.05 1.01 8.05 -51.93 -0.42 0.60 16 27 H 0.04 0.75 7.99 -51.93 -0.41 0.33 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.63 7.17 -51.93 -0.37 1.26 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 0.81 8.02 -51.93 -0.42 0.39 16 32 H 0.05 1.17 7.58 -51.93 -0.39 0.78 16 LS Contribution 252.49 15.07 3.80 3.80 Total: -1.00 -28.59 252.49 -7.02 -35.61 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.69 Total: -4.45 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.80 Total: -26.09 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.68 Total: -25.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.59 -7.02 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204031811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.305 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds