Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47201 * 2 1 4 4 C 1.53004 * 109.46775 * 119.99402 * 2 1 3 5 5 H 1.08993 * 110.82117 * 298.11731 * 4 2 1 6 6 C 1.54894 * 110.75410 * 61.46079 * 4 2 1 7 7 C 1.54266 * 104.31305 * 156.31914 * 6 4 2 8 8 C 1.53869 * 106.60031 * 336.32486 * 7 6 4 9 9 H 1.08995 * 110.04023 * 119.33232 * 8 7 6 10 10 C 1.50705 * 110.03024 * 240.71754 * 8 7 6 11 11 H 1.07999 * 120.00434 * 118.54185 * 10 8 7 12 12 C 1.37883 * 119.99691 * 298.53861 * 10 8 7 13 13 N 1.31510 * 119.99984 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 119.99905 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46620 * 60.00494 * 14 12 10 16 16 H 1.48497 * 109.47059 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47327 * 300.00698 * 14 12 10 18 18 C 1.54266 * 106.59800 * 359.97438 * 8 7 6 19 19 H 1.08992 * 109.47369 * 300.00108 * 1 2 3 20 20 H 1.09006 * 109.46949 * 60.00560 * 1 2 3 21 21 H 1.09006 * 109.47198 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47455 * 239.99353 * 2 1 3 23 23 H 1.09000 * 109.47009 * 299.99917 * 3 2 1 24 24 H 1.09004 * 109.47460 * 59.99532 * 3 2 1 25 25 H 1.09004 * 109.47709 * 179.97438 * 3 2 1 26 26 H 1.09002 * 110.48891 * 37.57340 * 6 4 2 27 27 H 1.08998 * 110.48494 * 275.06427 * 6 4 2 28 28 H 1.09001 * 110.03084 * 95.60669 * 7 6 4 29 29 H 1.08996 * 110.03108 * 216.98559 * 7 6 4 30 30 H 0.96998 * 120.00289 * 179.97438 * 13 12 10 31 31 H 1.09005 * 110.48526 * 142.29451 * 18 8 7 32 32 H 1.09007 * 110.48724 * 264.79935 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.7163 -0.2056 2.1535 6 6 1.5704 -2.1972 1.2612 7 6 2.5972 -2.9168 2.1599 8 6 3.8786 -2.0655 2.1321 9 1 4.1211 -1.7226 3.1379 10 6 5.0220 -2.8720 1.5723 11 1 5.5161 -2.5521 0.6668 12 6 5.4374 -4.0182 2.2163 13 7 4.8355 -4.4080 3.3187 14 14 6.8543 -5.0183 1.5220 15 1 8.0753 -4.1749 1.4675 16 1 7.1032 -6.1948 2.3932 17 1 6.5102 -5.4803 0.1533 18 6 3.5861 -0.8586 1.2169 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.5890 -2.6116 0.2532 27 1 0.5699 -2.2758 1.6865 28 1 2.2172 -2.9864 3.1792 29 1 2.8016 -3.9135 1.7691 30 1 5.1274 -5.2145 3.7715 31 1 4.0568 0.0421 1.6112 32 1 3.9327 -1.0561 0.2025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204031811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -56.951027 kcal Electronic energy + Delta-G solvation = -11371.185750 eV Core-core repulsion = 9522.330302 eV Total energy + Delta-G solvation = -1848.855448 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.55080 -35.86996 -33.83438 -30.05787 -28.79702 -27.62567 -25.79546 -22.25337 -20.72920 -20.41667 -18.15335 -16.61043 -16.38603 -15.53802 -15.20516 -14.28233 -14.16882 -13.71419 -13.52162 -13.00731 -12.91115 -12.85425 -12.49608 -12.31671 -12.24092 -11.66762 -11.58859 -11.25633 -11.17328 -11.05520 -10.77271 -10.70067 -10.43322 -8.11208 -6.21366 1.39488 1.41350 1.48932 2.43106 3.18818 3.94074 3.95211 4.09937 4.38688 4.52281 4.59488 4.81518 4.85607 4.91532 4.96340 5.07362 5.09110 5.15113 5.19441 5.23050 5.33690 5.41978 5.50857 5.54832 5.58877 5.69546 5.78301 5.97129 6.01930 6.43232 6.91789 7.45667 8.97597 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.069364 B = 0.010319 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.572786 B = 2712.818481 C = 2882.618549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.079 4.079 5 H 0.067 0.933 6 C -0.108 4.108 7 C -0.086 4.086 8 C 0.031 3.969 9 H -0.013 1.013 10 C -0.531 4.531 11 H 0.052 0.948 12 C 0.007 3.993 13 N -0.922 5.922 14 Si 0.953 3.047 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.270 1.270 18 C -0.098 4.098 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.027 0.973 30 H 0.259 0.741 31 H 0.047 0.953 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 7.567 -6.121 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.097 4.097 5 H 0.085 0.915 6 C -0.146 4.146 7 C -0.124 4.124 8 C 0.012 3.988 9 H 0.005 0.995 10 C -0.569 4.569 11 H 0.070 0.930 12 C -0.191 4.191 13 N -0.561 5.561 14 Si 0.778 3.222 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.195 1.195 18 C -0.136 4.136 19 H 0.075 0.925 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.880 7.426 -5.985 11.760 hybrid contribution 1.008 -0.954 0.191 1.401 sum -5.872 6.473 -5.793 10.485 Atomic orbital electron populations 1.21808 0.94208 1.01788 1.02050 1.21090 0.96443 0.96289 0.96646 1.21807 1.00745 0.95383 1.02041 1.22184 0.94577 0.94935 0.98018 0.91464 1.22381 0.97646 0.95498 0.99053 1.21854 0.95725 0.98505 0.96325 1.19308 0.93315 0.92614 0.93518 0.99475 1.21642 1.16665 1.08826 1.09737 0.92991 1.25813 0.99243 0.98785 0.95285 1.70114 1.42639 1.24559 1.18808 0.85690 0.79909 0.78129 0.78428 1.19588 1.20968 1.19513 1.22428 0.95358 0.96866 0.98949 0.92516 0.91622 0.92944 0.92087 0.91527 0.92527 0.93506 0.92508 0.91681 0.96293 0.95371 0.93191 0.93462 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.99 71.98 0.65 -2.57 16 2 C -0.09 -2.37 2.44 -10.79 -0.03 -2.40 16 3 C -0.14 -3.44 9.03 71.98 0.65 -2.79 16 4 C -0.08 -2.74 2.45 -9.37 -0.02 -2.76 16 5 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 6 C -0.11 -4.14 5.23 31.67 0.17 -3.97 16 7 C -0.09 -4.26 5.55 31.32 0.17 -4.09 16 8 C 0.03 1.63 2.85 -10.82 -0.03 1.60 16 9 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 10 C -0.53 -30.51 8.34 25.60 0.21 -30.30 16 11 H 0.05 2.92 7.55 -2.91 -0.02 2.89 16 12 C 0.01 0.40 5.07 84.66 0.43 0.83 16 13 N -0.92 -55.82 12.33 21.45 0.26 -55.56 16 14 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 C -0.10 -4.15 4.95 31.80 0.16 -4.00 16 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 21 H 0.05 1.22 7.22 -2.38 -0.02 1.21 16 22 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.05 1.22 7.38 -2.38 -0.02 1.20 16 26 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 27 H 0.06 2.19 7.99 -2.39 -0.02 2.17 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.03 1.54 7.17 -2.39 -0.02 1.52 16 30 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.05 1.89 8.02 -2.38 -0.02 1.87 16 32 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 Total: -1.00 -61.96 252.49 5.69 -56.27 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: 1.05 Total: 2.72 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 2.36 Total: -50.44 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.26 Total: -55.56 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.96 5.69 -56.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204031811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.681 kcal (2) G-P(sol) polarization free energy of solvation -61.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds