Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20765 * 119.99614 * 2 1 4 4 C 1.50695 * 120.00396 * 180.02562 * 2 1 3 5 5 H 1.08999 * 115.56124 * 16.32120 * 4 2 1 6 6 C 1.53007 * 117.49975 * 162.00532 * 4 2 1 7 7 H 1.09001 * 117.51574 * 0.02562 * 6 4 2 8 8 C 1.50701 * 117.50131 * 214.97901 * 6 4 2 9 9 H 1.07999 * 120.00024 * 291.38270 * 8 6 4 10 10 C 1.37872 * 119.99785 * 111.37638 * 8 6 4 11 11 N 1.31513 * 120.00171 * 0.02562 * 10 8 6 12 12 Si 1.86794 * 119.99971 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47381 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47405 * 300.00555 * 12 10 8 15 15 H 1.48499 * 109.47027 * 60.00416 * 12 10 8 16 16 C 1.53000 * 117.50202 * 230.63032 * 4 2 1 17 17 C 1.52994 * 117.50250 * 145.02115 * 16 4 2 18 18 C 1.53000 * 117.51592 * 359.97438 * 16 4 2 19 19 H 1.09000 * 109.46974 * 269.99049 * 1 2 3 20 20 H 1.08993 * 109.47468 * 30.00013 * 1 2 3 21 21 H 1.09004 * 109.46668 * 149.99924 * 1 2 3 22 22 H 0.97007 * 120.00153 * 359.97438 * 11 10 8 23 23 H 1.08997 * 109.47442 * 128.62028 * 17 16 4 24 24 H 1.08999 * 109.47226 * 248.62562 * 17 16 4 25 25 H 1.09001 * 109.46951 * 8.62247 * 17 16 4 26 26 H 1.09001 * 109.47111 * 358.06359 * 18 16 4 27 27 H 1.09006 * 109.46920 * 118.06375 * 18 16 4 28 28 H 1.09000 * 109.47702 * 238.05870 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.6785 -2.1841 -0.2773 6 6 3.7317 -1.2712 -0.4198 7 1 4.1548 -0.3050 -0.6949 8 6 4.2650 -2.4557 -1.1837 9 1 4.3718 -3.4115 -0.6922 10 6 4.6165 -2.3193 -2.5098 11 7 4.4868 -1.1554 -3.1081 12 14 5.2769 -3.7877 -3.4568 13 1 5.5789 -3.3814 -4.8529 14 1 6.5176 -4.2795 -2.8056 15 1 4.2598 -4.8697 -3.4648 16 6 3.3593 -1.4868 1.0485 17 6 3.5570 -2.8886 1.6288 18 6 3.6097 -0.3298 2.0177 19 1 -0.3633 -0.0002 1.0277 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 4.1435 -0.3928 -2.6165 23 1 4.6080 -3.1679 1.5541 24 1 3.2529 -2.8947 2.6755 25 1 2.9510 -3.6019 1.0703 26 1 2.9483 0.5007 1.7707 27 1 3.4123 -0.6608 3.0374 28 1 4.6470 -0.0050 1.9357 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213341582.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -35.221836 kcal Electronic energy + Delta-G solvation = -11143.544241 eV Core-core repulsion = 9159.797948 eV Total energy + Delta-G solvation = -1983.746294 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.32099 -36.40940 -32.57772 -30.09435 -28.24517 -26.95687 -24.90977 -22.04579 -19.18156 -17.89938 -16.44956 -15.15344 -14.67980 -14.22101 -13.85317 -13.45698 -13.02130 -12.46375 -12.02577 -11.85912 -11.67627 -11.44842 -11.18113 -10.97391 -10.78162 -10.50886 -10.15679 -9.46024 -9.12077 -8.65319 -8.43482 -8.17796 -6.48500 -4.15691 2.60933 3.39023 3.40395 3.59504 4.43650 4.76733 4.83249 5.39166 5.52520 5.68395 5.75390 5.80556 5.92626 6.07452 6.25186 6.30410 6.40130 6.46616 6.61234 6.70261 6.77655 6.86953 7.18450 7.34222 8.15543 8.28436 8.34470 8.74204 9.54146 10.90419 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.042321 B = 0.014047 C = 0.012204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.453954 B = 1992.761293 C = 2293.800813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.380 3.620 3 O -0.475 6.475 4 C -0.254 4.254 5 H 0.105 0.895 6 C 0.052 3.948 7 H 0.074 0.926 8 C -0.571 4.571 9 H 0.060 0.940 10 C 0.023 3.977 11 N -0.897 5.897 12 Si 1.071 2.929 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.286 1.286 16 C -0.127 4.127 17 C -0.093 4.093 18 C -0.120 4.120 19 H 0.086 0.914 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.275 0.725 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -2.044 6.338 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.259 3.741 3 O -0.352 6.352 4 C -0.274 4.274 5 H 0.123 0.877 6 C 0.033 3.967 7 H 0.092 0.908 8 C -0.608 4.608 9 H 0.078 0.922 10 C -0.183 4.183 11 N -0.530 5.530 12 Si 0.898 3.102 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.128 4.128 17 C -0.150 4.150 18 C -0.176 4.176 19 H 0.104 0.896 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.062 -1.967 4.833 6.613 hybrid contribution -0.950 0.371 1.534 1.842 sum -5.012 -1.597 6.367 8.259 Atomic orbital electron populations 1.22239 0.95899 1.03891 1.03466 1.23902 0.90850 0.89706 0.69624 1.90288 1.72119 1.35223 1.37596 1.23503 0.96091 0.96731 1.11099 0.87661 1.20176 0.87469 0.98964 0.90065 0.90788 1.21564 1.45767 0.95736 0.97691 0.92157 1.25988 0.94651 1.02148 0.95539 1.70753 1.41179 1.01176 1.39899 0.83519 0.76390 0.74045 0.76223 1.20631 1.21180 1.21257 1.21305 1.03241 0.95527 0.92698 1.21122 1.01660 0.94398 0.97830 1.21431 1.01802 0.97483 0.96929 0.89572 0.90665 0.90142 0.91427 0.92332 0.94392 0.92710 0.91973 0.93717 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 10.25 36.01 0.37 -2.63 15 2 C 0.38 7.80 6.23 -29.04 -0.18 7.62 15 3 O -0.48 -11.10 15.05 5.99 0.09 -11.01 15 4 C -0.25 -5.63 5.46 -91.77 -0.50 -6.14 15 5 H 0.11 2.27 8.05 -51.93 -0.42 1.85 15 6 C 0.05 1.34 4.49 -91.76 -0.41 0.93 15 7 H 0.07 2.11 6.71 -51.93 -0.35 1.76 15 8 C -0.57 -15.66 8.75 -34.44 -0.30 -15.96 15 9 H 0.06 1.60 6.60 -52.49 -0.35 1.25 15 10 C 0.02 0.66 5.46 -17.82 -0.10 0.56 15 11 N -0.90 -27.08 13.65 55.43 0.76 -26.33 15 12 Si 1.07 24.45 29.90 -169.99 -5.08 19.37 15 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 14 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 15 H -0.29 -6.21 7.11 56.52 0.40 -5.80 15 16 C -0.13 -2.73 2.70 -154.51 -0.42 -3.15 15 17 C -0.09 -1.77 8.42 37.15 0.31 -1.46 15 18 C -0.12 -2.33 9.63 37.16 0.36 -1.97 15 19 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.08 1.11 8.12 -51.93 -0.42 0.69 15 22 H 0.27 8.45 6.80 -40.82 -0.28 8.18 15 23 H 0.06 1.13 8.00 -51.93 -0.42 0.72 15 24 H 0.04 0.61 7.87 -51.93 -0.41 0.20 15 25 H 0.05 1.04 7.75 -51.93 -0.40 0.64 15 26 H 0.06 1.26 5.06 -51.93 -0.26 1.00 15 27 H 0.04 0.74 7.83 -51.93 -0.41 0.33 15 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 LS Contribution 238.53 15.07 3.59 3.59 Total: -1.00 -30.36 238.53 -5.28 -35.64 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.77 Total: 0.92 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.87 Total: -22.19 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.76 Total: -26.33 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.37 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.36 -5.28 -35.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213341582.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.423 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds