Wall clock time and date at job start Mon Mar 30 2020 01:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20765 * 119.99614 * 2 1 4 4 C 1.50695 * 120.00396 * 180.02562 * 2 1 3 5 5 H 1.08999 * 115.56124 * 16.32120 * 4 2 1 6 6 C 1.53007 * 117.49975 * 162.00532 * 4 2 1 7 7 H 1.09001 * 117.51574 * 0.02562 * 6 4 2 8 8 C 1.50701 * 117.50131 * 214.97901 * 6 4 2 9 9 H 1.07999 * 120.00024 * 291.38270 * 8 6 4 10 10 C 1.37872 * 119.99785 * 111.37638 * 8 6 4 11 11 N 1.31513 * 120.00171 * 0.02562 * 10 8 6 12 12 Si 1.86794 * 119.99971 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47381 * 180.02562 * 12 10 8 14 14 H 1.48501 * 109.47405 * 300.00555 * 12 10 8 15 15 H 1.48499 * 109.47027 * 60.00416 * 12 10 8 16 16 C 1.53000 * 117.50202 * 230.63032 * 4 2 1 17 17 C 1.52994 * 117.50250 * 145.02115 * 16 4 2 18 18 C 1.53000 * 117.51592 * 359.97438 * 16 4 2 19 19 H 1.09000 * 109.46974 * 269.99049 * 1 2 3 20 20 H 1.08993 * 109.47468 * 30.00013 * 1 2 3 21 21 H 1.09004 * 109.46668 * 149.99924 * 1 2 3 22 22 H 0.97007 * 120.00153 * 359.97438 * 11 10 8 23 23 H 1.08997 * 109.47442 * 128.62028 * 17 16 4 24 24 H 1.08999 * 109.47226 * 248.62562 * 17 16 4 25 25 H 1.09001 * 109.46951 * 8.62247 * 17 16 4 26 26 H 1.09001 * 109.47111 * 358.06359 * 18 16 4 27 27 H 1.09006 * 109.46920 * 118.06375 * 18 16 4 28 28 H 1.09000 * 109.47702 * 238.05870 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.6785 -2.1841 -0.2773 6 6 3.7317 -1.2712 -0.4198 7 1 4.1548 -0.3050 -0.6949 8 6 4.2650 -2.4557 -1.1837 9 1 4.3718 -3.4115 -0.6922 10 6 4.6165 -2.3193 -2.5098 11 7 4.4868 -1.1554 -3.1081 12 14 5.2769 -3.7877 -3.4568 13 1 5.5789 -3.3814 -4.8529 14 1 6.5176 -4.2795 -2.8056 15 1 4.2598 -4.8697 -3.4648 16 6 3.3593 -1.4868 1.0485 17 6 3.5570 -2.8886 1.6288 18 6 3.6097 -0.3298 2.0177 19 1 -0.3633 -0.0002 1.0277 20 1 -0.3634 0.8899 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 4.1435 -0.3928 -2.6165 23 1 4.6080 -3.1679 1.5541 24 1 3.2529 -2.8947 2.6755 25 1 2.9510 -3.6019 1.0703 26 1 2.9483 0.5007 1.7707 27 1 3.4123 -0.6608 3.0374 28 1 4.6470 -0.0050 1.9357 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213341582.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:35 Heat of formation + Delta-G solvation = -53.692555 kcal Electronic energy + Delta-G solvation = -11144.345192 eV Core-core repulsion = 9159.797948 eV Total energy + Delta-G solvation = -1984.547244 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.05503 -38.19360 -34.65142 -31.53824 -29.92267 -28.55135 -26.89382 -23.86938 -21.00297 -19.62063 -18.40806 -16.89076 -16.32558 -15.86985 -15.66120 -15.25465 -14.74067 -14.02682 -13.58060 -13.35824 -13.11987 -13.01764 -12.87301 -12.74121 -12.59265 -12.17499 -11.93969 -11.31830 -10.93344 -10.58126 -10.40163 -10.01424 -8.69462 -6.35415 0.96520 1.54238 1.62583 1.81284 2.55764 2.93526 3.15581 3.48355 4.07735 4.10519 4.22411 4.32779 4.44226 4.60713 4.68257 4.75422 4.83501 4.98912 5.04898 5.13918 5.16859 5.27089 5.28705 5.58243 6.05531 6.15307 6.52000 6.67284 7.43270 8.68909 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.042321 B = 0.014047 C = 0.012204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.453954 B = 1992.761293 C = 2293.800813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.374 3.626 3 O -0.511 6.511 4 C -0.246 4.246 5 H 0.114 0.886 6 C 0.004 3.996 7 H 0.030 0.970 8 C -0.575 4.575 9 H 0.068 0.932 10 C -0.033 4.033 11 N -0.933 5.933 12 Si 1.120 2.880 13 H -0.288 1.288 14 H -0.268 1.268 15 H -0.264 1.264 16 C -0.108 4.108 17 C -0.091 4.091 18 C -0.118 4.118 19 H 0.119 0.881 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.253 0.747 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -3.645 7.832 10.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.256 3.744 3 O -0.390 6.390 4 C -0.266 4.266 5 H 0.132 0.868 6 C -0.015 4.015 7 H 0.048 0.952 8 C -0.612 4.612 9 H 0.086 0.914 10 C -0.232 4.232 11 N -0.569 5.569 12 Si 0.941 3.059 13 H -0.214 1.214 14 H -0.193 1.193 15 H -0.188 1.188 16 C -0.109 4.109 17 C -0.148 4.148 18 C -0.175 4.175 19 H 0.137 0.863 20 H 0.103 0.897 21 H 0.116 0.884 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.389 -3.581 6.362 9.075 hybrid contribution -0.565 0.916 1.175 1.593 sum -5.955 -2.665 7.537 9.969 Atomic orbital electron populations 1.22198 0.90837 1.05269 1.05944 1.24504 0.93564 0.88251 0.68118 1.90289 1.73521 1.36073 1.39158 1.23554 0.94628 0.98240 1.10146 0.86840 1.19972 0.90702 0.96625 0.94156 0.95197 1.21882 1.45123 0.96343 0.97850 0.91406 1.27530 0.94666 1.03724 0.97257 1.70903 1.44266 1.01697 1.40018 0.82910 0.77052 0.71421 0.74563 1.21370 1.19260 1.18846 1.21554 1.00681 0.97765 0.90895 1.21145 1.01358 0.92332 0.99924 1.21442 1.01085 0.96495 0.98446 0.86266 0.89702 0.88352 0.93668 0.93007 0.90608 0.92814 0.93020 0.89938 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.05 10.25 71.24 0.73 -4.31 15 2 C 0.37 15.00 6.23 29.10 0.18 15.19 15 3 O -0.51 -24.18 15.05 -1.46 -0.02 -24.20 15 4 C -0.25 -10.72 5.46 -11.54 -0.06 -10.78 15 5 H 0.11 4.71 8.05 -2.39 -0.02 4.70 15 6 C 0.00 0.23 4.49 -11.54 -0.05 0.18 15 7 H 0.03 1.83 6.71 -2.39 -0.02 1.81 15 8 C -0.58 -31.94 8.75 25.60 0.22 -31.72 15 9 H 0.07 3.56 6.60 -2.91 -0.02 3.54 15 10 C -0.03 -1.91 5.46 84.65 0.46 -1.45 15 11 N -0.93 -58.75 13.65 21.45 0.29 -58.46 15 12 Si 1.12 49.25 29.90 68.60 2.05 51.30 15 13 H -0.29 -12.89 7.11 99.48 0.71 -12.18 15 14 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 16 C -0.11 -4.52 2.70 -52.18 -0.14 -4.66 15 17 C -0.09 -3.19 8.42 71.98 0.61 -2.59 15 18 C -0.12 -4.41 9.63 71.98 0.69 -3.71 15 19 H 0.12 2.52 8.14 -2.39 -0.02 2.50 15 20 H 0.08 2.19 8.14 -2.39 -0.02 2.18 15 21 H 0.10 2.35 8.12 -2.38 -0.02 2.33 15 22 H 0.25 16.64 6.80 -92.70 -0.63 16.01 15 23 H 0.05 1.89 8.00 -2.39 -0.02 1.87 15 24 H 0.08 2.11 7.87 -2.39 -0.02 2.09 15 25 H 0.05 1.89 7.75 -2.39 -0.02 1.87 15 26 H 0.05 2.05 5.06 -2.39 -0.01 2.04 15 27 H 0.08 2.45 7.83 -2.38 -0.02 2.43 15 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 Total: -1.00 -68.52 238.53 6.23 -62.29 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.27 Total: 12.93 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 2.64 Total: -43.86 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.29 Total: -58.46 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.02 Total: -24.20 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.05 Total: 51.30 kcal Total: -68.52 6.23 -62.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213341582.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.597 kcal (2) G-P(sol) polarization free energy of solvation -68.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds