Wall clock time and date at job start Mon Mar 30 2020 01:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20765 * 119.99898 * 2 1 4 4 C 1.50695 * 120.00637 * 180.02562 * 2 1 3 5 5 H 1.09005 * 115.55725 * 343.65780 * 4 2 1 6 6 C 1.53002 * 117.50441 * 197.96334 * 4 2 1 7 7 H 1.09000 * 117.49601 * 0.02653 * 6 4 2 8 8 C 1.50698 * 117.50003 * 145.01991 * 6 4 2 9 9 H 1.08001 * 120.00097 * 68.60975 * 8 6 4 10 10 C 1.37878 * 119.99835 * 248.61129 * 8 6 4 11 11 N 1.31514 * 119.99999 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 119.99862 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.46958 * 60.00182 * 12 10 8 14 14 H 1.48495 * 109.47065 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46792 * 299.99930 * 12 10 8 16 16 C 1.52994 * 60.00047 * 252.50871 * 6 4 2 17 17 C 1.53009 * 117.49911 * 107.48743 * 16 6 4 18 18 C 1.52998 * 117.49952 * 252.50711 * 16 6 4 19 19 H 1.09004 * 109.46583 * 240.00113 * 1 2 3 20 20 H 1.08996 * 109.47481 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47114 * 120.00474 * 1 2 3 22 22 H 0.96998 * 119.99985 * 359.97438 * 11 10 8 23 23 H 1.09000 * 109.46974 * 53.18900 * 17 16 6 24 24 H 1.09002 * 109.46897 * 173.18580 * 17 16 6 25 25 H 1.09002 * 109.47053 * 293.18888 * 17 16 6 26 26 H 1.08995 * 109.47084 * 60.00445 * 18 16 6 27 27 H 1.08999 * 109.47089 * 180.02562 * 18 16 6 28 28 H 1.08999 * 109.47015 * 300.00239 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.6786 -2.1842 0.2757 6 6 3.7318 -1.2715 0.4180 7 1 4.1546 -0.3055 0.6942 8 6 4.2655 -2.4565 1.1808 9 1 4.3719 -3.4120 0.6887 10 6 4.6178 -2.3209 2.5068 11 7 4.4878 -1.1575 3.1061 12 14 5.2786 -3.7901 3.4526 13 1 6.5188 -4.2815 2.8003 14 1 5.5804 -3.3848 4.8490 15 1 4.2613 -4.8719 3.4605 16 6 3.3589 -1.4861 -1.0502 17 6 3.6081 -0.3283 -2.0190 18 6 3.5563 -2.8875 -1.6316 19 1 -0.3633 -0.5139 0.8901 20 1 -0.3634 1.0276 0.0005 21 1 -0.3633 -0.5139 -0.8899 22 1 4.1443 -0.3947 2.6151 23 1 4.6446 -0.0016 -1.9357 24 1 3.4123 -0.6595 -3.0389 25 1 2.9448 0.5008 -1.7725 26 1 2.9504 -3.6011 -1.0734 27 1 3.2522 -2.8927 -2.6783 28 1 4.6073 -3.1668 -1.5576 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213341634.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:36 Heat of formation + Delta-G solvation = -35.397322 kcal Electronic energy + Delta-G solvation = -11143.608256 eV Core-core repulsion = 9159.854353 eV Total energy + Delta-G solvation = -1983.753903 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.31999 -36.40917 -32.57773 -30.08670 -28.24692 -26.95678 -24.91049 -22.05003 -19.18200 -17.88381 -16.45200 -15.16182 -14.66742 -14.21486 -13.85435 -13.46279 -13.01349 -12.49042 -12.03179 -11.85723 -11.65667 -11.44897 -11.18524 -10.96876 -10.77864 -10.50763 -10.15789 -9.46006 -9.12423 -8.65548 -8.43483 -8.18061 -6.48531 -4.15711 2.61991 3.38968 3.40303 3.59448 4.43587 4.76719 4.83305 5.39330 5.51790 5.69017 5.76350 5.79522 5.92648 6.06744 6.25363 6.30444 6.40151 6.47627 6.61267 6.70382 6.77730 6.86998 7.18424 7.34238 8.15577 8.28610 8.34501 8.74217 9.54123 10.90411 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.042329 B = 0.014046 C = 0.012203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.330009 B = 1992.910850 C = 2293.926131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.379 3.621 3 O -0.475 6.475 4 C -0.255 4.255 5 H 0.105 0.895 6 C 0.052 3.948 7 H 0.074 0.926 8 C -0.571 4.571 9 H 0.060 0.940 10 C 0.024 3.976 11 N -0.897 5.897 12 Si 1.071 2.929 13 H -0.285 1.285 14 H -0.281 1.281 15 H -0.286 1.286 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.093 4.093 19 H 0.086 0.914 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.274 0.726 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -2.081 -6.291 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.259 3.741 3 O -0.352 6.352 4 C -0.275 4.275 5 H 0.123 0.877 6 C 0.033 3.967 7 H 0.092 0.908 8 C -0.608 4.608 9 H 0.078 0.922 10 C -0.183 4.183 11 N -0.530 5.530 12 Si 0.898 3.102 13 H -0.212 1.212 14 H -0.206 1.206 15 H -0.213 1.213 16 C -0.127 4.127 17 C -0.177 4.177 18 C -0.150 4.150 19 H 0.105 0.895 20 H 0.090 0.910 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.071 -2.004 -4.789 6.597 hybrid contribution -0.950 0.364 -1.525 1.833 sum -5.022 -1.639 -6.313 8.232 Atomic orbital electron populations 1.22273 0.95885 1.03563 1.03837 1.23898 0.90862 0.89704 0.69661 1.90289 1.72162 1.35190 1.37530 1.23470 0.96101 0.96759 1.11127 0.87664 1.20170 0.87489 0.98963 0.90066 0.90791 1.21566 1.45753 0.95732 0.97712 0.92162 1.25990 0.94653 1.02153 0.95527 1.70752 1.41198 1.01188 1.39888 0.83520 0.76393 0.74046 0.76223 1.21173 1.20634 1.21262 1.21307 1.03222 0.95524 0.92688 1.21433 1.01808 0.97478 0.96932 1.21124 1.01665 0.94405 0.97823 0.89519 0.91028 0.89725 0.91428 0.92803 0.93714 0.91965 0.92707 0.94392 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 10.26 36.00 0.37 -2.64 15 2 C 0.38 7.79 6.23 -29.04 -0.18 7.61 15 3 O -0.47 -11.10 15.04 6.00 0.09 -11.01 15 4 C -0.25 -5.64 5.47 -91.77 -0.50 -6.14 15 5 H 0.11 2.27 8.05 -51.93 -0.42 1.85 15 6 C 0.05 1.34 4.49 -91.77 -0.41 0.92 15 7 H 0.07 2.11 6.71 -51.93 -0.35 1.76 15 8 C -0.57 -15.65 8.75 -34.44 -0.30 -15.95 15 9 H 0.06 1.60 6.60 -52.49 -0.35 1.25 15 10 C 0.02 0.66 5.46 -17.82 -0.10 0.56 15 11 N -0.90 -27.08 13.65 55.43 0.76 -26.32 15 12 Si 1.07 24.44 29.90 -169.99 -5.08 19.36 15 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 15 16 C -0.13 -2.72 2.70 -154.51 -0.42 -3.14 15 17 C -0.12 -2.33 9.63 37.16 0.36 -1.97 15 18 C -0.09 -1.77 8.42 37.16 0.31 -1.46 15 19 H 0.09 1.22 8.14 -51.93 -0.42 0.79 15 20 H 0.07 1.02 8.12 -51.93 -0.42 0.59 15 21 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 22 H 0.27 8.45 6.79 -40.82 -0.28 8.17 15 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 24 H 0.04 0.74 7.83 -51.93 -0.41 0.34 15 25 H 0.06 1.26 5.06 -51.93 -0.26 1.00 15 26 H 0.05 1.04 7.75 -51.93 -0.40 0.64 15 27 H 0.04 0.61 7.87 -51.93 -0.41 0.20 15 28 H 0.06 1.13 8.00 -51.93 -0.42 0.72 15 LS Contribution 238.52 15.07 3.59 3.59 Total: -1.00 -30.36 238.52 -5.28 -35.64 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.77 Total: 0.94 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -0.87 Total: -22.21 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.76 Total: -26.32 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.36 -5.28 -35.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213341634.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.245 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds