Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35248 * 117.00059 * 2 1 4 4 O 1.34734 * 126.49107 * 359.97438 * 3 2 1 5 5 C 1.35074 * 107.65965 * 180.02562 * 4 3 2 6 6 C 1.39494 * 125.59215 * 179.73970 * 5 4 3 7 7 H 1.08003 * 120.00073 * 174.24422 * 6 5 4 8 8 C 1.40223 * 120.00244 * 354.23765 * 6 5 4 9 9 N 1.30730 * 119.99784 * 6.07993 * 8 6 5 10 10 Si 1.86801 * 120.00420 * 186.08281 * 8 6 5 11 11 H 1.48499 * 109.47316 * 94.97781 * 10 8 6 12 12 H 1.48499 * 109.47174 * 214.98359 * 10 8 6 13 13 H 1.48504 * 109.46573 * 334.98264 * 10 8 6 14 14 N 1.32894 * 108.81085 * 359.97438 * 5 4 3 15 15 C 1.32875 * 108.83208 * 0.02562 * 14 5 4 16 16 C 1.50706 * 126.15818 * 179.97438 * 15 14 5 17 17 H 1.09001 * 109.46959 * 180.02562 * 1 2 3 18 18 H 1.08996 * 109.47370 * 300.00223 * 1 2 3 19 19 H 1.08998 * 109.46989 * 60.00173 * 1 2 3 20 20 H 0.97004 * 120.00136 * 180.02562 * 9 8 6 21 21 H 1.09004 * 109.46842 * 270.02669 * 16 15 14 22 22 H 1.08996 * 109.47223 * 30.02203 * 16 15 14 23 23 H 1.08996 * 109.47233 * 150.02492 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2051 0.0000 4 8 1.4417 2.4108 -0.0005 5 6 2.4105 3.3519 -0.0009 6 6 2.2025 4.7312 -0.0066 7 1 3.0419 5.4043 0.0874 8 6 0.9037 5.2439 -0.1345 9 7 -0.1223 4.4338 -0.1288 10 14 0.6393 7.0845 -0.3131 11 1 0.5377 7.4326 -1.7531 12 1 -0.6148 7.4740 0.3801 13 1 1.7852 7.8100 0.2919 14 7 3.5944 2.7481 -0.0001 15 6 3.4051 1.4329 0.0003 16 6 4.4829 0.3795 0.0006 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -1.0208 4.7884 -0.2177 21 1 4.7431 0.1256 -1.0270 22 1 5.3646 0.7619 0.5147 23 1 4.1204 -0.5109 0.5143 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213679582.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -37.873972 kcal Electronic energy + Delta-G solvation = -10996.491643 eV Core-core repulsion = 8811.371338 eV Total energy + Delta-G solvation = -2185.120304 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.02670 -37.26898 -33.76330 -33.26141 -29.92356 -27.28647 -26.94993 -23.82721 -20.64216 -19.83112 -17.31088 -16.98926 -15.56022 -15.23397 -14.35650 -13.88705 -13.75318 -12.89482 -12.28774 -12.05285 -11.45035 -11.37828 -11.30566 -10.96334 -10.76802 -10.54029 -10.37207 -9.56642 -9.19674 -8.68632 -6.95357 -6.93902 -4.54853 2.85886 3.01870 3.08145 3.31850 3.82622 3.91225 4.09031 4.88366 5.22605 5.74445 5.84766 5.91779 6.11102 6.13172 6.44310 6.55947 6.95320 7.00015 7.40767 7.73132 8.12999 8.29960 8.56121 8.68512 9.80501 10.09204 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.055777 B = 0.013937 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.875639 B = 2008.624077 C = 2487.928053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.278 6.278 3 C -0.004 4.004 4 O -0.201 6.201 5 C 0.347 3.653 6 C -0.428 4.428 7 H 0.113 0.887 8 C 0.069 3.931 9 N -0.784 5.784 10 Si 0.933 3.067 11 H -0.267 1.267 12 H -0.275 1.275 13 H -0.257 1.257 14 N -0.592 5.592 15 C -0.005 4.005 16 C -0.048 4.048 17 H 0.086 0.914 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.285 0.715 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -2.391 -0.148 2.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.193 6.193 3 C -0.102 4.102 4 O -0.097 6.097 5 C 0.162 3.838 6 C -0.464 4.464 7 H 0.131 0.869 8 C -0.152 4.152 9 N -0.412 5.412 10 Si 0.756 3.244 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.181 1.181 14 N -0.327 5.327 15 C -0.129 4.129 16 C -0.106 4.106 17 H 0.105 0.895 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.123 -2.293 -0.149 2.558 hybrid contribution -1.401 0.381 -0.110 1.456 sum -2.523 -1.912 -0.259 3.176 Atomic orbital electron populations 1.22702 0.79495 1.01844 1.01834 1.86053 1.20643 1.20717 1.91905 1.21422 0.89859 0.79141 1.19744 1.84779 1.37409 1.13155 1.74307 1.21615 0.78458 0.90032 0.93696 1.18319 0.94529 0.86468 1.47096 0.86883 1.26098 0.95152 1.01782 0.92173 1.69750 1.00033 1.37558 1.33876 0.85886 0.78890 0.80256 0.79351 1.19189 1.20026 1.18059 1.70819 1.24804 1.03185 1.33901 1.20844 0.88951 0.92924 1.10206 1.19777 0.95404 0.94587 1.00824 0.89523 0.93221 0.93204 0.90455 0.92690 0.92102 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.78 101.05 1.09 1.78 14 2 O -0.28 -6.40 10.53 -40.51 -0.43 -6.83 14 3 C 0.00 -0.11 7.96 30.68 0.24 0.14 14 4 O -0.20 -5.88 8.59 -20.72 -0.18 -6.05 14 5 C 0.35 10.28 7.63 -16.62 -0.13 10.15 14 6 C -0.43 -11.85 9.43 -38.37 -0.36 -12.22 14 7 H 0.11 2.96 7.86 -52.48 -0.41 2.55 14 8 C 0.07 1.76 5.49 -17.28 -0.09 1.67 14 9 N -0.78 -20.70 11.98 55.56 0.67 -20.04 14 10 Si 0.93 18.50 29.57 -169.99 -5.03 13.48 14 11 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 12 H -0.28 -5.28 7.11 56.52 0.40 -4.88 14 13 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 14 N -0.59 -17.05 11.33 -9.21 -0.10 -17.15 14 15 C -0.01 -0.14 7.18 -82.19 -0.59 -0.73 14 16 C -0.05 -0.98 10.43 36.01 0.38 -0.61 14 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 14 18 H 0.05 0.95 8.14 -51.93 -0.42 0.53 14 19 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 20 H 0.28 6.70 8.29 -40.82 -0.34 6.36 14 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 14 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 14 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 14 LS Contribution 217.23 15.07 3.27 3.27 Total: -1.00 -31.29 217.23 -3.34 -34.63 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -2.08 Total: -1.50 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 0.54 Total: 0.18 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.56 Total: -37.19 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.60 Total: -12.88 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.29 -3.34 -34.63 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213679582.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.241 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds