Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35180 * 119.99854 * 2 1 4 4 C 1.39278 * 126.94876 * 179.43671 * 3 2 1 5 5 C 1.41016 * 125.80861 * 359.97438 * 4 3 2 6 6 H 1.07997 * 119.99755 * 28.39271 * 5 4 3 7 7 C 1.39751 * 119.99945 * 208.39489 * 5 4 3 8 8 N 1.31063 * 119.99917 * 19.31539 * 7 5 4 9 9 Si 1.86797 * 119.99695 * 199.31694 * 7 5 4 10 10 H 1.48500 * 109.46991 * 90.00076 * 9 7 5 11 11 H 1.48500 * 109.46879 * 209.99663 * 9 7 5 12 12 H 1.48501 * 109.47374 * 329.99849 * 9 7 5 13 13 C 1.46879 * 108.38444 * 179.85323 * 4 3 2 14 14 O 1.21546 * 124.87264 * 180.17965 * 13 4 3 15 15 O 1.34397 * 110.26038 * 0.42977 * 13 4 3 16 16 C 1.45321 * 108.84932 * 359.75007 * 15 13 4 17 17 H 1.08996 * 109.47211 * 300.26939 * 1 2 3 18 18 H 1.08989 * 109.47398 * 60.27958 * 1 2 3 19 19 H 1.09008 * 109.46708 * 180.27727 * 1 2 3 20 20 H 0.97007 * 120.00015 * 179.72080 * 2 1 3 21 21 H 0.97006 * 119.99970 * 180.02562 * 8 7 5 22 22 H 1.09008 * 110.06785 * 240.76418 * 16 15 13 23 23 H 1.08997 * 110.07375 * 119.23294 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1408 1.1707 0.0000 4 6 3.5233 1.3393 0.0109 5 6 4.4807 0.3039 0.0247 6 1 4.2469 -0.6535 -0.4169 7 6 5.7318 0.5168 0.6099 8 7 5.8985 1.4995 1.4609 9 14 7.1664 -0.5992 0.1790 10 1 7.8942 -0.0412 -0.9890 11 1 8.0886 -0.6902 1.3394 12 1 6.6570 -1.9533 -0.1560 13 6 3.8146 2.7789 0.0028 14 8 4.9297 3.2623 0.0059 15 8 2.6711 3.4850 -0.0031 16 6 1.5490 2.5615 -0.0053 17 1 -0.3633 0.5180 0.8875 18 1 -0.3633 0.5094 -0.8924 19 1 -0.3633 -1.0278 0.0050 20 1 1.9500 -0.8401 0.0041 21 1 6.7670 1.6476 1.8668 22 1 0.9458 2.7079 -0.9013 23 1 0.9391 2.7118 0.8855 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215986618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = -58.421933 kcal Electronic energy + Delta-G solvation = -11059.991451 eV Core-core repulsion = 8873.980121 eV Total energy + Delta-G solvation = -2186.011331 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.56726 -35.95462 -35.16172 -33.19805 -30.19186 -27.17171 -25.49849 -24.27842 -19.86406 -19.30106 -17.02178 -16.08098 -15.40253 -14.95481 -14.68649 -13.73847 -13.38408 -13.14480 -12.40972 -12.17038 -11.98340 -11.50640 -11.11937 -10.81321 -10.66424 -10.08852 -9.84871 -9.26699 -8.78069 -8.46079 -6.74829 -6.37924 -3.84403 2.77545 3.21716 3.25821 3.28412 4.15905 4.43042 4.50939 4.68657 5.41430 5.60849 5.74762 5.87811 5.99656 6.07669 6.13718 6.21885 7.39163 7.45156 8.07155 8.26378 8.67149 8.79577 9.01524 9.12979 9.41580 10.53752 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.016708 C = 0.012718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.986317 B = 1675.399483 C = 2201.133213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.713 5.713 3 C -0.085 4.085 4 C -0.074 4.074 5 C -0.443 4.443 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.777 5.777 9 Si 0.905 3.095 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.504 3.496 14 O -0.460 6.460 15 O -0.363 6.363 16 C 0.122 3.878 17 H 0.035 0.965 18 H 0.035 0.965 19 H 0.059 0.941 20 H 0.398 0.602 21 H 0.277 0.723 22 H 0.071 0.929 23 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -3.313 -1.564 8.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.349 5.349 3 C -0.189 4.189 4 C -0.085 4.085 5 C -0.474 4.474 6 H 0.093 0.907 7 C -0.143 4.143 8 N -0.402 5.402 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.349 3.651 14 O -0.345 6.345 15 O -0.280 6.280 16 C 0.046 3.954 17 H 0.053 0.947 18 H 0.053 0.947 19 H 0.078 0.922 20 H 0.233 0.767 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.692 -2.563 -1.398 7.301 hybrid contribution 0.756 -0.875 -0.128 1.163 sum -5.936 -3.438 -1.526 7.027 Atomic orbital electron populations 1.21259 0.82518 1.00706 0.99512 1.41697 1.03139 1.04825 1.85283 1.19329 0.92137 0.86643 1.20748 1.18977 0.90799 0.91735 1.06962 1.18361 0.97042 0.98034 1.33956 0.90748 1.25714 0.99738 0.95413 0.93476 1.69860 1.24931 1.26256 1.19106 0.86390 0.81164 0.80641 0.78776 1.19703 1.20729 1.19114 1.21398 0.82524 0.88031 0.73178 1.90727 1.20153 1.77881 1.45766 1.87026 1.18004 1.36562 1.86454 1.21734 0.86677 0.86304 1.00733 0.94682 0.94700 0.92240 0.76707 0.91295 0.91131 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.48 10.73 59.85 0.64 2.12 14 2 N -0.71 -13.51 5.73 -62.64 -0.36 -13.87 14 3 C -0.09 -1.94 7.20 -80.51 -0.58 -2.52 14 4 C -0.07 -2.02 5.70 -104.96 -0.60 -2.62 14 5 C -0.44 -12.19 8.98 -37.96 -0.34 -12.53 14 6 H 0.07 1.92 7.74 -52.49 -0.41 1.52 14 7 C 0.08 2.08 5.06 -17.31 -0.09 1.99 14 8 N -0.78 -22.62 10.91 55.54 0.61 -22.01 14 9 Si 0.90 20.40 29.60 -169.99 -5.03 15.37 14 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 14 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 13 C 0.50 14.33 8.05 34.23 0.28 14.60 14 14 O -0.46 -14.36 15.49 -18.98 -0.29 -14.65 14 15 O -0.36 -9.02 11.14 -39.32 -0.44 -9.46 14 16 C 0.12 2.48 7.24 36.23 0.26 2.74 14 17 H 0.03 0.47 8.14 -51.93 -0.42 0.05 14 18 H 0.03 0.46 8.14 -51.94 -0.42 0.03 14 19 H 0.06 0.67 8.14 -51.92 -0.42 0.24 14 20 H 0.40 7.47 8.46 -40.82 -0.35 7.13 14 21 H 0.28 7.49 8.30 -40.82 -0.34 7.15 14 22 H 0.07 1.23 8.14 -51.92 -0.42 0.81 14 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 14 LS Contribution 212.37 15.07 3.20 3.20 Total: -1.00 -31.96 212.37 -4.74 -36.70 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -2.00 Total: 0.93 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -0.43 Total: 3.79 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.25 Total: -35.88 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.73 Total: -24.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -31.96 -4.74 -36.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215986618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.717 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds