Wall clock time and date at job start Mon Mar 30 2020 02:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35180 * 119.99854 * 2 1 4 4 C 1.39278 * 126.94876 * 179.43671 * 3 2 1 5 5 C 1.41016 * 125.80861 * 359.97438 * 4 3 2 6 6 H 1.07997 * 119.99755 * 28.39271 * 5 4 3 7 7 C 1.39751 * 119.99945 * 208.39489 * 5 4 3 8 8 N 1.31063 * 119.99917 * 19.31539 * 7 5 4 9 9 Si 1.86797 * 119.99695 * 199.31694 * 7 5 4 10 10 H 1.48500 * 109.46991 * 90.00076 * 9 7 5 11 11 H 1.48500 * 109.46879 * 209.99663 * 9 7 5 12 12 H 1.48501 * 109.47374 * 329.99849 * 9 7 5 13 13 C 1.46879 * 108.38444 * 179.85323 * 4 3 2 14 14 O 1.21546 * 124.87264 * 180.17965 * 13 4 3 15 15 O 1.34397 * 110.26038 * 0.42977 * 13 4 3 16 16 C 1.45321 * 108.84932 * 359.75007 * 15 13 4 17 17 H 1.08996 * 109.47211 * 300.26939 * 1 2 3 18 18 H 1.08989 * 109.47398 * 60.27958 * 1 2 3 19 19 H 1.09008 * 109.46708 * 180.27727 * 1 2 3 20 20 H 0.97007 * 120.00015 * 179.72080 * 2 1 3 21 21 H 0.97006 * 119.99970 * 180.02562 * 8 7 5 22 22 H 1.09008 * 110.06785 * 240.76418 * 16 15 13 23 23 H 1.08997 * 110.07375 * 119.23294 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1408 1.1707 0.0000 4 6 3.5233 1.3393 0.0109 5 6 4.4807 0.3039 0.0247 6 1 4.2469 -0.6535 -0.4169 7 6 5.7318 0.5168 0.6099 8 7 5.8985 1.4995 1.4609 9 14 7.1664 -0.5992 0.1790 10 1 7.8942 -0.0412 -0.9890 11 1 8.0886 -0.6902 1.3394 12 1 6.6570 -1.9533 -0.1560 13 6 3.8146 2.7789 0.0028 14 8 4.9297 3.2623 0.0059 15 8 2.6711 3.4850 -0.0031 16 6 1.5490 2.5615 -0.0053 17 1 -0.3633 0.5180 0.8875 18 1 -0.3633 0.5094 -0.8924 19 1 -0.3633 -1.0278 0.0050 20 1 1.9500 -0.8401 0.0041 21 1 6.7670 1.6476 1.8668 22 1 0.9458 2.7079 -0.9013 23 1 0.9391 2.7118 0.8855 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215986618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:32 Heat of formation + Delta-G solvation = -81.967853 kcal Electronic energy + Delta-G solvation = -11061.012479 eV Core-core repulsion = 8873.980121 eV Total energy + Delta-G solvation = -2187.032359 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.50162 -37.93957 -36.98982 -35.05744 -31.99174 -28.98896 -26.99538 -26.14602 -21.83891 -21.07464 -18.94352 -17.94260 -17.26803 -16.72222 -16.55643 -15.52338 -14.90603 -14.76972 -14.32852 -13.97771 -13.73443 -12.97926 -12.76845 -12.72246 -12.40982 -11.90514 -11.67250 -11.09014 -10.65931 -10.46918 -8.62818 -8.24441 -5.78387 0.84772 1.39623 1.47483 1.53214 2.32929 2.53300 2.66578 2.92548 3.44454 3.94093 4.32112 4.40643 4.47496 4.61043 4.86927 5.03799 5.46174 5.53776 6.15341 6.35319 6.81529 7.03913 7.12217 7.23202 7.43753 8.67947 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.044364 B = 0.016708 C = 0.012718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.986317 B = 1675.399483 C = 2201.133213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.706 5.706 3 C 0.000 4.000 4 C -0.156 4.156 5 C -0.475 4.475 6 H 0.078 0.922 7 C 0.021 3.979 8 N -0.837 5.837 9 Si 0.971 3.029 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.249 1.249 13 C 0.488 3.512 14 O -0.513 6.513 15 O -0.371 6.371 16 C 0.107 3.893 17 H 0.051 0.949 18 H 0.056 0.944 19 H 0.093 0.907 20 H 0.401 0.599 21 H 0.270 0.730 22 H 0.120 0.880 23 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -4.666 -2.174 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.338 5.338 3 C -0.108 4.108 4 C -0.168 4.168 5 C -0.508 4.508 6 H 0.096 0.904 7 C -0.191 4.191 8 N -0.465 5.465 9 Si 0.794 3.206 10 H -0.207 1.207 11 H -0.204 1.204 12 H -0.172 1.172 13 C 0.336 3.664 14 O -0.402 6.402 15 O -0.288 6.288 16 C 0.032 3.968 17 H 0.070 0.930 18 H 0.075 0.925 19 H 0.111 0.889 20 H 0.236 0.764 21 H 0.080 0.920 22 H 0.138 0.862 23 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.078 -3.979 -2.020 11.022 hybrid contribution 1.163 -0.502 -0.005 1.267 sum -8.915 -4.482 -2.025 10.182 Atomic orbital electron populations 1.21707 0.78412 1.03818 1.01164 1.42318 1.05941 1.03769 1.81739 1.20031 0.91513 0.89082 1.10146 1.19109 0.92800 0.91211 1.13639 1.18509 0.98366 0.98555 1.35401 0.90447 1.26530 1.02449 0.96864 0.93230 1.69978 1.24901 1.29590 1.22041 0.85378 0.77905 0.79352 0.77938 1.20687 1.20361 1.17185 1.21716 0.82687 0.88833 0.73160 1.90665 1.22061 1.78598 1.48875 1.86979 1.18108 1.37536 1.86172 1.22350 0.85874 0.83652 1.04894 0.93043 0.92513 0.88856 0.76439 0.92027 0.86210 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.94 10.73 127.77 1.37 3.31 14 2 N -0.71 -23.24 5.73 -352.10 -2.02 -25.26 14 3 C 0.00 0.02 7.20 42.44 0.31 0.32 14 4 C -0.16 -8.51 5.70 -20.08 -0.11 -8.63 14 5 C -0.48 -26.80 8.98 23.32 0.21 -26.59 14 6 H 0.08 4.05 7.74 -2.91 -0.02 4.02 14 7 C 0.02 1.21 5.06 85.17 0.43 1.64 14 8 N -0.84 -51.70 10.91 21.80 0.24 -51.46 14 9 Si 0.97 43.77 29.60 68.60 2.03 45.80 14 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 14 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 14 12 H -0.25 -10.21 7.11 99.48 0.71 -9.51 14 13 C 0.49 28.40 8.05 70.08 0.56 28.96 14 14 O -0.51 -33.79 15.49 19.38 0.30 -33.49 14 15 O -0.37 -17.97 11.14 -53.40 -0.59 -18.56 14 16 C 0.11 3.85 7.24 71.38 0.52 4.37 14 17 H 0.05 1.01 8.14 -2.39 -0.02 0.99 14 18 H 0.06 1.05 8.14 -2.39 -0.02 1.03 14 19 H 0.09 1.44 8.14 -2.38 -0.02 1.42 14 20 H 0.40 13.46 8.46 -92.70 -0.78 12.68 14 21 H 0.27 15.75 8.30 -92.70 -0.77 14.98 14 22 H 0.12 3.36 8.14 -2.38 -0.02 3.34 14 23 H 0.12 3.42 8.14 -2.39 -0.02 3.40 14 Total: -1.00 -74.46 212.37 3.69 -70.77 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.45 Total: 8.81 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 3.28 Total: 3.40 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.78 Total: -76.72 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.29 Total: -52.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -74.46 3.69 -70.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215986618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.197 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds