Wall clock time and date at job start Mon Mar 30 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 C 1.53001 * 109.47119 * 120.00217 * 2 1 3 5 5 H 1.09001 * 110.53587 * 302.61238 * 4 2 1 6 6 C 1.54887 * 110.48548 * 65.22432 * 4 2 1 7 7 C 1.54893 * 102.74533 * 156.62347 * 6 4 2 8 8 C 1.54266 * 104.19500 * 322.05712 * 7 6 4 9 9 C 1.53872 * 106.60044 * 23.61099 * 8 7 6 10 10 H 1.09000 * 110.07390 * 240.69427 * 9 8 7 11 11 C 1.50699 * 110.03502 * 119.28320 * 9 8 7 12 12 H 1.07997 * 120.00536 * 242.83978 * 11 9 8 13 13 C 1.37884 * 119.99778 * 62.83688 * 11 9 8 14 14 N 1.31516 * 119.99861 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 119.99790 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47351 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47485 * 119.99995 * 15 13 11 18 18 H 1.48511 * 109.46760 * 239.99522 * 15 13 11 19 19 H 1.08997 * 109.47561 * 299.99787 * 1 2 3 20 20 H 1.09000 * 109.47374 * 60.00209 * 1 2 3 21 21 H 1.09001 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47063 * 240.00214 * 2 1 3 23 23 H 1.08997 * 109.46941 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46910 * 300.00075 * 3 2 1 25 25 H 1.09005 * 109.46645 * 60.00034 * 3 2 1 26 26 H 1.09001 * 110.75744 * 274.93249 * 6 4 2 27 27 H 1.09000 * 110.75698 * 38.31067 * 6 4 2 28 28 H 1.09002 * 110.48578 * 203.38190 * 7 6 4 29 29 H 1.08998 * 110.60430 * 80.79077 * 7 6 4 30 30 H 1.09002 * 110.02957 * 264.32709 * 8 7 6 31 31 H 1.09000 * 110.07144 * 142.92082 * 8 7 6 32 32 H 0.96996 * 120.00042 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6488 -0.2487 2.1502 6 6 1.6474 -2.2190 1.2086 7 6 2.6987 -2.8732 2.1392 8 6 4.0012 -2.1031 1.8388 9 6 3.5824 -0.7349 1.2729 10 1 3.9725 -0.6127 0.2625 11 6 4.0948 0.3697 2.1608 12 1 3.3991 1.0243 2.6646 13 6 5.4520 0.5447 2.3299 14 7 6.2993 -0.2527 1.7168 15 14 6.0871 1.9135 3.4310 16 1 4.9390 2.6637 4.0004 17 1 6.8925 1.3288 4.5331 18 1 6.9349 2.8365 2.6342 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8901 26 1 0.6407 -2.3653 1.6002 27 1 1.7301 -2.6127 0.1955 28 1 2.8162 -3.9299 1.8987 29 1 2.4152 -2.7501 3.1844 30 1 4.5945 -2.6458 1.1028 31 1 4.5759 -1.9682 2.7551 32 1 7.2540 -0.1294 1.8355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219617514.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:32 Heat of formation + Delta-G solvation = -54.958051 kcal Electronic energy + Delta-G solvation = -11638.841662 eV Core-core repulsion = 9790.072637 eV Total energy + Delta-G solvation = -1848.769026 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.60977 -35.29105 -34.28599 -30.16232 -28.42930 -27.53539 -25.89391 -22.04070 -21.09822 -20.07247 -18.18730 -16.66997 -16.06359 -15.61019 -15.10140 -14.20290 -13.95808 -13.85880 -13.40499 -13.16729 -12.95047 -12.83221 -12.39591 -12.34840 -11.89111 -11.82123 -11.48529 -11.34394 -11.15654 -10.91626 -10.63789 -10.57957 -10.40821 -8.06581 -6.13057 1.38076 1.40585 1.51059 2.45501 3.24577 4.04682 4.07564 4.13936 4.38293 4.52903 4.60546 4.89949 4.92943 4.95667 5.02920 5.06858 5.14762 5.17484 5.23245 5.29019 5.42726 5.44426 5.51162 5.63054 5.71898 5.76997 5.81767 6.03677 6.10610 6.50964 6.99411 7.52440 9.02817 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040369 B = 0.015377 C = 0.012317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.436166 B = 1820.483602 C = 2272.822498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.135 4.135 4 C -0.077 4.077 5 H 0.052 0.948 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.092 4.092 9 C 0.048 3.952 10 H -0.008 1.008 11 C -0.505 4.505 12 H 0.050 0.950 13 C 0.006 3.994 14 N -0.924 5.924 15 Si 0.943 3.057 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.284 1.284 19 H 0.051 0.949 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.026 0.974 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.649 -1.059 -1.587 9.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.193 4.193 4 C -0.095 4.095 5 H 0.071 0.929 6 C -0.146 4.146 7 C -0.158 4.158 8 C -0.131 4.131 9 C 0.029 3.971 10 H 0.010 0.990 11 C -0.543 4.543 12 H 0.068 0.932 13 C -0.191 4.191 14 N -0.565 5.565 15 Si 0.770 3.230 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.210 1.210 19 H 0.070 0.930 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.467 -1.078 -1.600 9.661 hybrid contribution 1.186 0.720 0.592 1.509 sum -8.280 -0.358 -1.009 8.349 Atomic orbital electron populations 1.21786 0.93835 1.02046 1.01639 1.21049 0.96283 0.95738 0.97051 1.21728 1.00776 0.96368 1.00410 1.22060 0.95779 0.94891 0.96812 0.92936 1.22496 0.98121 0.94878 0.99092 1.22377 0.95561 0.98575 0.99314 1.21944 0.95655 0.97050 0.98438 1.19265 0.91377 0.92411 0.94037 0.98978 1.21580 0.91261 1.14314 1.27146 0.93193 1.25716 0.97684 0.98262 0.97449 1.70123 1.02012 1.39593 1.44754 0.85722 0.78403 0.79897 0.78972 1.19002 1.21043 1.20996 0.93008 0.92061 0.91874 0.92753 0.94368 0.92457 0.93741 0.90452 0.91809 0.91687 0.92438 0.96430 0.95542 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.03 71.98 0.65 -2.99 16 2 C -0.08 -2.89 2.31 -10.79 -0.02 -2.92 16 3 C -0.14 -5.02 8.58 71.98 0.62 -4.41 16 4 C -0.08 -3.08 1.97 -9.72 -0.02 -3.10 16 5 H 0.05 2.20 7.68 -2.39 -0.02 2.18 16 6 C -0.11 -3.68 5.45 31.89 0.17 -3.51 16 7 C -0.12 -4.56 6.83 31.67 0.22 -4.34 16 8 C -0.09 -4.53 5.60 31.32 0.18 -4.35 16 9 C 0.05 2.40 1.72 -10.82 -0.02 2.38 16 10 H -0.01 -0.45 7.55 -2.39 -0.02 -0.47 16 11 C -0.50 -27.89 7.03 25.60 0.18 -27.71 16 12 H 0.05 2.74 7.54 -2.91 -0.02 2.71 16 13 C 0.01 0.36 5.09 84.66 0.43 0.79 16 14 N -0.92 -55.42 12.44 21.45 0.27 -55.16 16 15 Si 0.94 44.79 29.54 68.60 2.03 46.82 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.06 1.52 7.34 -2.39 -0.02 1.50 16 22 H 0.05 1.94 8.12 -2.39 -0.02 1.92 16 23 H 0.04 1.69 6.42 -2.39 -0.02 1.67 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.08 2.19 8.00 -2.39 -0.02 2.17 16 27 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.03 1.42 7.26 -2.39 -0.02 1.41 16 32 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -60.65 250.18 5.72 -54.92 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.05 Total: 3.57 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 2.38 Total: -50.16 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.27 Total: -55.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -60.65 5.72 -54.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219617514.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.033 kcal (2) G-P(sol) polarization free energy of solvation -60.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds