Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47393 * 2 1 4 4 C 1.52995 * 109.47229 * 120.00135 * 2 1 3 5 5 H 1.09005 * 110.06180 * 189.43119 * 4 2 1 6 6 C 1.54265 * 110.03171 * 310.85075 * 4 2 1 7 7 C 1.54886 * 104.19889 * 142.89708 * 6 4 2 8 8 C 1.54890 * 102.74523 * 322.05464 * 7 6 4 9 9 C 1.53874 * 110.03241 * 68.01502 * 4 2 1 10 10 H 1.09009 * 110.03549 * 121.43581 * 9 4 2 11 11 C 1.50698 * 110.07546 * 0.02570 * 9 4 2 12 12 H 1.08003 * 119.99717 * 8.30465 * 11 9 4 13 13 C 1.37883 * 120.00000 * 188.30919 * 11 9 4 14 14 N 1.31512 * 120.00256 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99449 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47493 * 60.00347 * 15 13 11 17 17 H 1.48508 * 109.46772 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47472 * 299.99559 * 15 13 11 19 19 H 1.09001 * 109.47166 * 308.92375 * 1 2 3 20 20 H 1.08997 * 109.47228 * 68.92306 * 1 2 3 21 21 H 1.09000 * 109.47264 * 188.92162 * 1 2 3 22 22 H 1.09003 * 109.47001 * 239.99791 * 2 1 3 23 23 H 1.09004 * 109.46926 * 295.00641 * 3 2 1 24 24 H 1.09001 * 109.47105 * 55.00105 * 3 2 1 25 25 H 1.09002 * 109.47071 * 175.00672 * 3 2 1 26 26 H 1.08996 * 110.48976 * 24.21563 * 6 4 2 27 27 H 1.08999 * 110.48739 * 261.57062 * 6 4 2 28 28 H 1.09000 * 110.75825 * 203.74290 * 7 6 4 29 29 H 1.09002 * 110.76097 * 80.36685 * 7 6 4 30 30 H 1.09007 * 110.48822 * 156.62124 * 8 7 6 31 31 H 1.08996 * 110.48974 * 279.26440 * 8 7 6 32 32 H 0.96994 * 119.99766 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1170 -0.5839 1.3468 6 6 1.3224 -0.1790 2.5025 7 6 1.1277 -1.4271 3.3987 8 6 0.7963 -2.5375 2.3709 9 6 1.7055 -2.2209 1.1655 10 1 2.6201 -2.8113 1.2225 11 6 0.9792 -2.5178 -0.1211 12 1 0.8883 -1.7534 -0.8787 13 6 0.4306 -3.7653 -0.3310 14 7 0.5417 -4.6962 0.5913 15 14 -0.4703 -4.1330 -1.9255 16 1 0.4569 -3.9514 -3.0712 17 1 -0.9618 -5.5342 -1.9045 18 1 -1.6217 -3.2061 -2.0687 19 1 -0.3633 0.6457 0.7995 20 1 -0.3633 0.3696 -0.9589 21 1 -0.3634 -1.0152 0.1594 22 1 1.8933 -0.5139 -0.8900 23 1 1.7516 1.9298 -0.9314 24 1 1.6055 1.9815 0.8418 25 1 3.1264 1.4437 0.0894 26 1 0.3579 0.2517 2.2335 27 1 1.9437 0.5603 3.0079 28 1 0.2979 -1.2806 4.0901 29 1 2.0450 -1.6619 3.9387 30 1 1.0337 -3.5195 2.7802 31 1 -0.2531 -2.4877 2.0806 32 1 0.1561 -5.5738 0.4434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219617664.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -16.420264 kcal Electronic energy + Delta-G solvation = -11889.625943 eV Core-core repulsion = 10042.528041 eV Total energy + Delta-G solvation = -1847.097902 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.37493 -33.24196 -32.34882 -28.25773 -26.54524 -26.38771 -23.75740 -20.98964 -19.19728 -17.79343 -15.87403 -14.79435 -14.69155 -13.91887 -13.51798 -12.64265 -12.36541 -12.19713 -11.72508 -11.29637 -10.86814 -10.76315 -10.69562 -10.43045 -10.13465 -9.98628 -9.63960 -9.54000 -9.35917 -9.17499 -8.89015 -8.32678 -8.23084 -5.90647 -3.88614 3.35674 3.40857 3.43282 4.50706 5.39834 5.67227 5.69636 5.78254 5.99403 6.06618 6.09277 6.38219 6.48700 6.53133 6.56737 6.62416 6.74665 6.82367 6.95095 7.02639 7.11244 7.22103 7.35084 7.44161 7.49000 7.70856 7.89419 8.05614 8.14452 8.59314 9.10261 9.70474 11.18225 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.040359 B = 0.017807 C = 0.013707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.609818 B = 1572.021004 C = 2042.215208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.079 4.079 5 H 0.042 0.958 6 C -0.120 4.120 7 C -0.136 4.136 8 C -0.083 4.083 9 C 0.047 3.953 10 H 0.017 0.983 11 C -0.515 4.515 12 H 0.078 0.922 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.881 3.119 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.277 1.277 19 H 0.034 0.966 20 H 0.028 0.972 21 H 0.106 0.894 22 H 0.077 0.923 23 H 0.040 0.960 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 7.265 1.176 7.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.094 4.094 3 C -0.205 4.205 4 C -0.098 4.098 5 H 0.061 0.939 6 C -0.158 4.158 7 C -0.174 4.174 8 C -0.121 4.121 9 C 0.029 3.971 10 H 0.035 0.965 11 C -0.553 4.553 12 H 0.096 0.904 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.203 1.203 19 H 0.053 0.947 20 H 0.047 0.953 21 H 0.124 0.876 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.407 7.070 1.208 7.184 hybrid contribution -0.477 -0.296 -0.842 1.012 sum -0.070 6.774 0.366 6.785 Atomic orbital electron populations 1.22406 0.95685 1.05069 0.98321 1.21040 0.96102 0.92820 0.99434 1.21968 1.00013 0.98378 1.00173 1.21805 0.96749 0.98354 0.92897 0.93933 1.22527 1.00213 0.96661 0.96353 1.22654 0.99086 0.97691 0.97929 1.22179 1.00167 0.95340 0.94448 1.19269 0.94922 0.88721 0.94228 0.96504 1.21750 1.34078 0.97278 1.02171 0.90385 1.25020 0.96716 0.96538 0.96017 1.70002 1.45631 1.03886 1.33417 0.86832 0.80335 0.77223 0.84675 1.20447 1.21575 1.20292 0.94664 0.95302 0.87592 0.90510 0.94053 0.93657 0.93811 0.91442 0.94307 0.93836 0.93400 0.92823 0.92965 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 7.43 37.16 0.28 -2.84 16 2 C -0.08 -1.48 2.18 -90.62 -0.20 -1.68 16 3 C -0.15 -2.41 9.00 37.16 0.33 -2.07 16 4 C -0.08 -1.65 2.70 -89.51 -0.24 -1.89 16 5 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 6 C -0.12 -2.27 5.58 -25.07 -0.14 -2.41 16 7 C -0.14 -2.69 6.91 -24.74 -0.17 -2.86 16 8 C -0.08 -1.98 5.01 -25.07 -0.13 -2.11 16 9 C 0.05 1.16 2.83 -90.65 -0.26 0.90 16 10 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 11 C -0.51 -13.49 5.53 -34.44 -0.19 -13.69 16 12 H 0.08 1.97 3.88 -52.48 -0.20 1.77 16 13 C 0.06 1.59 5.25 -17.82 -0.09 1.49 16 14 N -0.89 -25.49 11.84 55.43 0.66 -24.84 16 15 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H 0.03 0.63 6.19 -51.93 -0.32 0.31 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.11 2.41 5.18 -51.93 -0.27 2.14 16 22 H 0.08 1.63 6.37 -51.93 -0.33 1.30 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 25 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.07 1.26 5.28 -51.93 -0.27 0.99 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 1.37 7.74 -51.93 -0.40 0.97 16 31 H 0.05 1.33 7.80 -51.93 -0.41 0.92 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -27.00 238.75 -6.70 -33.70 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.12 Total: -1.45 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -0.81 Total: -27.15 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.66 Total: -24.84 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.00 -6.70 -33.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219617664.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -27.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds