Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 H 1.09000 * 109.46840 * 304.94069 * 3 2 1 5 5 C 1.53001 * 109.47129 * 64.94128 * 3 2 1 6 6 C 1.50700 * 109.46803 * 186.61983 * 5 3 2 7 7 H 1.07992 * 119.99979 * 5.10009 * 6 5 3 8 8 C 1.37874 * 119.99530 * 185.09118 * 6 5 3 9 9 N 1.31515 * 120.00511 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99797 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47197 * 60.00444 * 10 8 6 12 12 H 1.48506 * 109.47048 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46963 * 299.99960 * 10 8 6 14 14 C 1.52995 * 109.46888 * 184.94332 * 3 2 1 15 15 C 1.53775 * 113.61670 * 60.00030 * 14 3 2 16 16 C 1.53778 * 87.08480 * 139.98085 * 15 14 3 17 17 C 1.53783 * 87.17224 * 334.52356 * 16 15 14 18 18 H 1.09003 * 109.47157 * 54.49448 * 1 2 3 19 19 H 1.09010 * 109.47401 * 174.49112 * 1 2 3 20 20 H 1.09002 * 109.47480 * 294.48841 * 1 2 3 21 21 H 1.08996 * 109.47046 * 239.99704 * 2 1 3 22 22 H 1.08996 * 109.46897 * 120.00027 * 2 1 3 23 23 H 1.08996 * 109.46987 * 306.62221 * 5 3 2 24 24 H 1.08996 * 109.47207 * 66.61889 * 5 3 2 25 25 H 0.96998 * 120.00147 * 179.97438 * 9 8 6 26 26 H 1.08999 * 112.85030 * 288.80279 * 14 3 2 27 27 H 1.09002 * 113.62044 * 25.43092 * 15 14 3 28 28 H 1.08999 * 113.61804 * 254.52697 * 15 14 3 29 29 H 1.08994 * 113.61614 * 89.11173 * 16 15 14 30 30 H 1.08999 * 113.61905 * 219.93877 * 16 15 14 31 31 H 1.08998 * 113.61560 * 140.02259 * 17 16 15 32 32 H 1.09001 * 113.61633 * 270.92698 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6061 1.9812 -0.8424 5 6 1.6339 2.1270 1.3067 6 6 1.9922 3.5893 1.2401 7 1 2.3862 4.0076 0.3258 8 6 1.8167 4.3930 2.3465 9 7 1.3371 3.8835 3.4601 10 14 2.2600 6.2058 2.2639 11 1 1.4498 6.8659 1.2089 12 1 1.9804 6.8441 3.5753 13 1 3.7027 6.3484 1.9421 14 6 3.5649 1.4442 -0.1243 15 6 4.0789 0.7758 -1.4102 16 6 5.1212 1.9039 -1.4865 17 6 4.1377 2.7640 -0.6753 18 1 -0.3633 0.5969 -0.8366 19 1 -0.3634 -1.0230 -0.0987 20 1 -0.3634 0.4260 0.9352 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 0.5589 2.0225 1.4528 24 1 2.1607 1.6614 2.1397 25 1 1.2140 4.4489 4.2386 26 1 4.0636 1.0938 0.7793 27 1 3.3586 0.7908 -2.2282 28 1 4.5139 -0.2101 -1.2461 29 1 6.0463 1.6803 -0.9554 30 1 5.2923 2.2728 -2.4978 31 1 4.6201 3.3821 0.0819 32 1 3.4334 3.3216 -1.2926 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221233755.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = -29.595476 kcal Electronic energy + Delta-G solvation = -11411.566381 eV Core-core repulsion = 9563.897159 eV Total energy + Delta-G solvation = -1847.669222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08097 -36.14896 -34.46690 -30.85461 -27.97556 -26.17497 -24.96479 -23.69226 -20.71673 -20.21868 -18.32456 -16.67078 -16.06849 -15.95102 -15.23185 -14.53435 -14.06289 -13.65549 -13.55289 -13.15818 -12.88285 -12.80143 -12.68302 -12.43351 -12.19266 -11.84294 -11.74485 -11.28452 -11.17899 -11.01611 -10.57017 -10.52885 -10.25498 -8.11721 -6.18058 1.39097 1.41330 1.48481 2.44233 3.21676 3.91179 3.95131 4.00372 4.17738 4.33437 4.45448 4.57266 4.76549 4.91124 5.02580 5.04685 5.08279 5.13638 5.15235 5.22661 5.29189 5.39933 5.42935 5.49791 5.58905 5.70246 5.83937 5.90705 5.99581 6.39775 6.98645 7.48749 9.00462 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.034117 B = 0.014788 C = 0.011002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.504889 B = 1893.024093 C = 2544.316264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.066 4.066 4 H 0.051 0.949 5 C 0.033 3.967 6 C -0.517 4.517 7 H 0.069 0.931 8 C -0.005 4.005 9 N -0.940 5.940 10 Si 0.951 3.049 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.268 1.268 14 C -0.095 4.095 15 C -0.124 4.124 16 C -0.135 4.135 17 C -0.129 4.129 18 H 0.052 0.948 19 H 0.068 0.932 20 H 0.032 0.968 21 H 0.077 0.923 22 H 0.045 0.955 23 H -0.010 1.010 24 H -0.018 1.018 25 H 0.258 0.742 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -5.331 -9.565 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.085 4.085 4 H 0.070 0.930 5 C -0.004 4.004 6 C -0.555 4.555 7 H 0.087 0.913 8 C -0.201 4.201 9 N -0.582 5.582 10 Si 0.777 3.223 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.193 1.193 14 C -0.113 4.113 15 C -0.161 4.161 16 C -0.173 4.173 17 C -0.166 4.166 18 H 0.071 0.929 19 H 0.087 0.913 20 H 0.051 0.949 21 H 0.095 0.905 22 H 0.064 0.936 23 H 0.008 0.992 24 H 0.001 0.999 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.185 -5.284 -9.400 11.567 hybrid contribution -0.075 1.152 0.791 1.399 sum 4.110 -4.133 -8.609 10.397 Atomic orbital electron populations 1.21763 0.96232 1.01485 1.00963 1.21509 0.95755 0.96275 1.01368 1.21113 0.94693 0.95049 0.97641 0.93047 1.19071 0.94260 0.94446 0.92660 1.21791 1.40627 0.95337 0.97787 0.91275 1.25898 0.95832 1.02940 0.95432 1.70106 1.47794 1.37316 1.02941 0.85707 0.79080 0.80395 0.77147 1.19307 1.21389 1.19331 1.22395 0.94820 0.97111 0.97014 1.22890 0.98205 0.97909 0.97131 1.22841 0.97089 0.96986 1.00354 1.22878 0.98450 0.96521 0.98758 0.92884 0.91306 0.94864 0.90451 0.93587 0.99199 0.99933 0.93303 0.92043 0.89697 0.90782 0.90118 0.90491 0.93973 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.54 71.98 0.69 -4.14 16 2 C -0.11 -3.80 5.29 30.59 0.16 -3.64 16 3 C -0.07 -2.72 1.66 -10.79 -0.02 -2.73 16 4 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 5 C 0.03 1.73 4.33 29.85 0.13 1.86 16 6 C -0.52 -29.22 8.18 25.60 0.21 -29.01 16 7 H 0.07 3.70 5.60 -2.91 -0.02 3.69 16 8 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 9 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 10 Si 0.95 45.25 29.54 68.60 2.03 47.28 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 13 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 14 C -0.09 -3.51 3.01 -10.18 -0.03 -3.54 16 15 C -0.12 -3.43 6.59 31.12 0.21 -3.23 16 16 C -0.14 -3.72 8.07 31.12 0.25 -3.47 16 17 C -0.13 -4.67 5.52 31.22 0.17 -4.50 16 18 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 19 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 20 H 0.03 1.26 6.69 -2.39 -0.02 1.24 16 21 H 0.08 2.18 7.28 -2.39 -0.02 2.16 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H -0.01 -0.59 6.39 -2.39 -0.02 -0.60 16 24 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 2.57 7.38 -2.39 -0.02 2.56 16 Total: -1.00 -63.24 252.76 5.59 -57.65 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.05 Total: 5.64 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 2.23 Total: -52.22 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.28 Total: -58.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.24 5.59 -57.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221233755.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.054 kcal (2) G-P(sol) polarization free energy of solvation -63.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds