Wall clock time and date at job start Mon Mar 30 2020 02:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 C 1.50705 * 109.46942 * 65.00497 * 5 3 2 7 7 H 1.08004 * 119.99864 * 359.97438 * 6 5 3 8 8 C 1.37875 * 119.99743 * 179.97438 * 6 5 3 9 9 N 1.31514 * 120.00320 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99601 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46879 * 90.00379 * 10 8 6 12 12 H 1.48496 * 109.47155 * 210.00170 * 10 8 6 13 13 H 1.48501 * 109.47459 * 330.00556 * 10 8 6 14 14 C 1.53003 * 109.47015 * 64.99921 * 3 2 1 15 15 C 1.53775 * 113.61671 * 277.50035 * 14 3 2 16 16 C 1.53784 * 87.08310 * 220.01504 * 15 14 3 17 17 C 1.53778 * 113.61761 * 179.97438 * 14 3 2 18 18 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 19 19 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 21 21 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 22 22 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 23 23 H 1.08999 * 109.47047 * 184.99963 * 5 3 2 24 24 H 1.08993 * 109.47112 * 305.00335 * 5 3 2 25 25 H 0.96997 * 119.99633 * 180.02562 * 9 8 6 26 26 H 1.09000 * 112.84533 * 48.80827 * 14 3 2 27 27 H 1.09003 * 113.61735 * 334.57037 * 15 14 3 28 28 H 1.09000 * 113.61592 * 105.46589 * 15 14 3 29 29 H 1.08997 * 113.61613 * 270.88069 * 16 15 14 30 30 H 1.09001 * 113.68778 * 139.99107 * 16 15 14 31 31 H 1.09001 * 113.61937 * 254.53215 * 17 14 3 32 32 H 1.09001 * 113.61121 * 25.43936 * 17 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 6 3.9589 0.8822 -1.4673 7 1 3.1979 0.5559 -2.1607 8 6 5.2910 0.7846 -1.8094 9 7 6.2177 1.1815 -0.9648 10 14 5.7795 0.0872 -3.4721 11 1 5.8611 1.1877 -4.4658 12 1 7.1024 -0.5781 -3.3605 13 1 4.7633 -0.9024 -3.9118 14 6 1.6352 2.1265 1.3074 15 6 0.1964 2.6692 1.2990 16 6 0.7389 3.8973 2.0489 17 6 2.1028 3.5880 1.4084 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 1.8934 -0.5138 0.8899 22 1 1.8933 -0.5138 -0.8900 23 1 3.9355 2.4655 -0.0366 24 1 3.9954 0.8311 0.6659 25 1 7.1548 1.1131 -1.2058 26 1 1.8734 1.5304 2.1883 27 1 -0.1785 2.8972 0.3011 28 1 -0.4994 2.0707 1.8870 29 1 0.7305 3.7856 3.1331 30 1 0.3042 4.8402 1.7172 31 1 2.9455 3.7312 2.0848 32 1 2.2493 4.0674 0.4406 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221233813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:58 Heat of formation + Delta-G solvation = -30.166595 kcal Electronic energy + Delta-G solvation = -11318.662217 eV Core-core repulsion = 9470.968229 eV Total energy + Delta-G solvation = -1847.693987 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 182.137 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20636 -36.13018 -34.37632 -31.17247 -27.80037 -26.31868 -24.88815 -23.72586 -20.80121 -20.19924 -18.44922 -16.61022 -16.40399 -15.92786 -14.76490 -14.53438 -14.29884 -14.09486 -13.35710 -13.16420 -12.94235 -12.72081 -12.58426 -12.44503 -12.20936 -11.98411 -11.55531 -11.33438 -11.30288 -11.10305 -10.62748 -10.48033 -10.36509 -8.16537 -6.25674 1.38159 1.39322 1.50248 2.41531 3.16080 3.87034 3.89766 3.93578 4.11919 4.33299 4.47099 4.62838 4.78508 4.85177 4.94372 4.98804 5.09037 5.10048 5.15299 5.19324 5.28377 5.40047 5.42215 5.54754 5.59493 5.66370 5.70832 5.92026 5.97195 6.32929 6.91390 7.42215 8.95194 Molecular weight = 182.14amu Principal moments of inertia in cm(-1) A = 0.050116 B = 0.011170 C = 0.009687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.564493 B = 2506.103545 C = 2889.791785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.063 4.063 4 H 0.049 0.951 5 C 0.034 3.966 6 C -0.529 4.529 7 H 0.058 0.942 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.264 1.264 14 C -0.107 4.107 15 C -0.122 4.122 16 C -0.130 4.130 17 C -0.144 4.144 18 H 0.072 0.928 19 H 0.055 0.945 20 H 0.050 0.950 21 H 0.044 0.956 22 H 0.042 0.958 23 H -0.010 1.010 24 H -0.018 1.018 25 H 0.261 0.739 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 1.589 3.580 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.082 4.082 4 H 0.067 0.933 5 C -0.003 4.003 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.576 5.576 10 Si 0.784 3.216 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.188 1.188 14 C -0.126 4.126 15 C -0.159 4.159 16 C -0.167 4.167 17 C -0.182 4.182 18 H 0.091 0.909 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.009 0.991 24 H 0.000 1.000 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.489 1.599 3.599 12.146 hybrid contribution 1.105 -0.329 -0.819 1.415 sum -10.384 1.270 2.780 10.824 Atomic orbital electron populations 1.21893 0.94370 1.01575 1.02389 1.21409 0.96451 0.96252 1.00460 1.21068 0.95531 0.95658 0.95893 0.93300 1.18989 0.92186 0.94464 0.94622 1.21700 0.91960 1.40669 1.02400 0.92396 1.25953 0.96928 0.96185 1.00971 1.70109 1.00617 1.49356 1.37561 0.85541 0.77639 0.78753 0.79703 1.19897 1.20870 1.18795 1.22588 0.97422 0.95189 0.97353 1.22970 0.95217 0.96951 1.00799 1.22822 0.95215 0.98624 1.00085 1.22902 0.97783 0.97220 1.00271 0.90909 0.92566 0.93095 0.93749 0.93911 0.99117 0.99987 0.93024 0.90483 0.90286 0.90014 0.89306 0.90636 0.93186 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.27 71.98 0.67 -3.48 16 2 C -0.11 -4.12 5.29 30.59 0.16 -3.96 16 3 C -0.06 -2.63 1.66 -10.79 -0.02 -2.65 16 4 H 0.05 2.08 7.94 -2.39 -0.02 2.06 16 5 C 0.03 1.86 4.33 29.85 0.13 1.99 16 6 C -0.53 -30.73 8.34 25.60 0.21 -30.52 16 7 H 0.06 3.25 7.08 -2.91 -0.02 3.23 16 8 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 9 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 10 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 14 C -0.11 -3.67 2.90 -10.27 -0.03 -3.70 16 15 C -0.12 -3.19 5.65 31.12 0.18 -3.01 16 16 C -0.13 -3.24 8.08 31.14 0.25 -2.99 16 17 C -0.14 -4.84 6.59 31.13 0.21 -4.64 16 18 H 0.07 1.83 5.09 -2.39 -0.01 1.82 16 19 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 21 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.04 1.82 6.82 -2.39 -0.02 1.80 16 23 H -0.01 -0.56 7.28 -2.39 -0.02 -0.58 16 24 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.08 2.06 7.96 -2.39 -0.02 2.04 16 28 H 0.08 1.80 7.08 -2.39 -0.02 1.78 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -64.18 252.51 5.58 -58.59 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.05 Total: 4.85 kcal Atomic # 6 Polarization: -54.92 SS G_CDS: 2.22 Total: -52.70 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.28 Total: -58.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.18 5.58 -58.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221233813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds