Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20766 * 120.00084 * 2 1 4 4 C 1.50706 * 120.00320 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.01341 * 330.69989 * 4 2 1 6 6 C 1.54268 * 110.03101 * 92.09219 * 4 2 1 7 7 C 1.55009 * 104.13558 * 95.69153 * 6 4 2 8 8 C 1.54894 * 102.75650 * 37.94673 * 7 6 4 9 9 C 1.53868 * 110.03224 * 209.31423 * 4 2 1 10 10 H 1.09000 * 110.03387 * 359.97438 * 9 4 2 11 11 C 1.50701 * 110.03341 * 121.38177 * 9 4 2 12 12 H 1.07999 * 120.00359 * 359.97438 * 11 9 4 13 13 C 1.37877 * 120.00092 * 179.97438 * 11 9 4 14 14 N 1.31514 * 119.99877 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00233 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46722 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46891 * 120.00353 * 15 13 11 18 18 H 1.48496 * 109.47522 * 240.00343 * 15 13 11 19 19 H 1.09003 * 109.46821 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47457 * 300.00350 * 1 2 3 21 21 H 1.09004 * 109.47067 * 60.00369 * 1 2 3 22 22 H 1.09001 * 110.48009 * 214.35276 * 6 4 2 23 23 H 1.08995 * 110.48671 * 337.00091 * 6 4 2 24 24 H 1.09005 * 110.75790 * 279.62797 * 7 6 4 25 25 H 1.08997 * 110.90394 * 156.33225 * 7 6 4 26 26 H 1.09004 * 110.48415 * 203.37117 * 8 7 6 27 27 H 1.08997 * 110.59749 * 80.78237 * 8 7 6 28 28 H 0.97001 * 120.00019 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.6736 -2.0746 0.5022 6 6 2.5706 -1.7369 -1.4476 7 6 4.0096 -1.2176 -1.6976 8 6 4.7032 -1.4624 -0.3345 9 6 3.6157 -1.1309 0.7083 10 1 3.7286 -0.1024 1.0509 11 6 3.7136 -2.0780 1.8764 12 1 2.8938 -2.7441 2.1018 13 6 4.8496 -2.0941 2.6576 14 7 5.8476 -1.2827 2.3835 15 14 4.9706 -3.2675 4.1060 16 1 3.7232 -4.0677 4.2003 17 1 6.1282 -4.1770 3.9108 18 1 5.1569 -2.4910 5.3580 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 2.5355 -2.8226 -1.5377 23 1 1.8707 -1.2726 -2.1423 24 1 4.0000 -0.1551 -1.9409 25 1 4.4975 -1.7888 -2.4874 26 1 5.5593 -0.7979 -0.2173 27 1 5.0141 -2.5032 -0.2439 28 1 6.6467 -1.2937 2.9332 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238075395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -61.637063 kcal Electronic energy + Delta-G solvation = -11241.835353 eV Core-core repulsion = 9256.943609 eV Total energy + Delta-G solvation = -1984.891744 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.18314 -36.15870 -32.44120 -30.29444 -28.24832 -27.31089 -24.08369 -20.87282 -19.39654 -17.99283 -16.57382 -15.23098 -14.72692 -14.45033 -14.16671 -13.48151 -13.08726 -12.32682 -12.06378 -11.70691 -11.58130 -11.00217 -10.84254 -10.57639 -10.41893 -10.10095 -9.83567 -9.54916 -9.41841 -8.68508 -8.61478 -8.32979 -5.96156 -3.99479 2.67902 3.31551 3.39489 3.42361 4.45564 4.78346 5.34546 5.47193 5.60220 5.61913 5.74776 5.80778 5.98516 6.31602 6.39054 6.48201 6.62079 6.75432 6.81620 6.98556 7.30965 7.41025 7.78481 7.91753 8.11321 8.27879 8.47732 9.03562 9.63565 11.13435 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.045931 B = 0.013947 C = 0.012476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.468585 B = 2007.083340 C = 2243.832776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.361 3.639 3 O -0.462 6.462 4 C -0.140 4.140 5 H 0.086 0.914 6 C -0.100 4.100 7 C -0.133 4.133 8 C -0.090 4.090 9 C 0.053 3.947 10 H 0.043 0.957 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.886 5.886 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 H 0.077 0.923 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 -1.296 -5.358 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.237 3.763 3 O -0.336 6.336 4 C -0.159 4.159 5 H 0.104 0.896 6 C -0.138 4.138 7 C -0.171 4.171 8 C -0.128 4.128 9 C 0.035 3.965 10 H 0.061 0.939 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.525 5.525 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 H 0.096 0.904 20 H 0.103 0.897 21 H 0.099 0.901 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.913 -0.687 -5.286 8.730 hybrid contribution 0.046 -0.746 0.895 1.166 sum -6.867 -1.433 -4.392 8.276 Atomic orbital electron populations 1.22306 0.96175 1.03950 1.03650 1.24773 0.90952 0.91236 0.69385 1.90333 1.71993 1.35353 1.35878 1.22607 1.01007 0.94892 0.97424 0.89572 1.22160 0.97086 1.00326 0.94188 1.22669 0.95470 0.99565 0.99403 1.22255 0.98786 1.00520 0.91284 1.19307 0.86283 0.98326 0.92588 0.93891 1.21310 1.01610 1.20549 1.11986 0.92611 1.24988 0.95952 0.95682 0.97445 1.70002 1.05971 1.37323 1.39161 0.86594 0.77956 0.81021 0.82770 1.19822 1.21075 1.21104 0.90402 0.89691 0.90088 0.91358 0.93404 0.92697 0.93213 0.92526 0.92947 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.82 10.33 36.00 0.37 -2.45 15 2 C 0.36 6.99 6.18 -29.03 -0.18 6.81 15 3 O -0.46 -10.66 16.43 5.99 0.10 -10.56 15 4 C -0.14 -2.88 2.81 -90.65 -0.25 -3.13 15 5 H 0.09 1.69 7.29 -51.93 -0.38 1.31 15 6 C -0.10 -1.79 6.37 -25.01 -0.16 -1.95 15 7 C -0.13 -2.64 6.91 -24.67 -0.17 -2.81 15 8 C -0.09 -2.19 5.44 -25.07 -0.14 -2.33 15 9 C 0.05 1.37 2.33 -90.66 -0.21 1.16 15 10 H 0.04 1.26 6.81 -51.93 -0.35 0.91 15 11 C -0.52 -14.27 8.37 -34.44 -0.29 -14.56 15 12 H 0.06 1.49 7.33 -52.49 -0.38 1.11 15 13 C 0.06 1.72 5.33 -17.82 -0.09 1.63 15 14 N -0.89 -26.18 12.43 55.43 0.69 -25.49 15 15 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 19 H 0.08 0.92 7.95 -51.93 -0.41 0.51 15 20 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 0.74 7.83 -51.93 -0.41 0.33 15 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.06 1.48 7.97 -51.93 -0.41 1.07 15 27 H 0.05 1.31 7.85 -51.93 -0.41 0.91 15 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 235.83 15.07 3.55 3.55 Total: -1.00 -30.68 235.83 -5.81 -36.49 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.01 Total: -2.80 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.12 Total: -17.63 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.69 Total: -25.49 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.10 Total: -10.56 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.68 -5.81 -36.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238075395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.148 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds