Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20766 * 120.00084 * 2 1 4 4 C 1.50706 * 120.00320 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.01341 * 330.69989 * 4 2 1 6 6 C 1.54268 * 110.03101 * 92.09219 * 4 2 1 7 7 C 1.55009 * 104.13558 * 95.69153 * 6 4 2 8 8 C 1.54894 * 102.75650 * 37.94673 * 7 6 4 9 9 C 1.53868 * 110.03224 * 209.31423 * 4 2 1 10 10 H 1.09000 * 110.03387 * 359.97438 * 9 4 2 11 11 C 1.50701 * 110.03341 * 121.38177 * 9 4 2 12 12 H 1.07999 * 120.00359 * 359.97438 * 11 9 4 13 13 C 1.37877 * 120.00092 * 179.97438 * 11 9 4 14 14 N 1.31514 * 119.99877 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00233 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46722 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46891 * 120.00353 * 15 13 11 18 18 H 1.48496 * 109.47522 * 240.00343 * 15 13 11 19 19 H 1.09003 * 109.46821 * 179.97438 * 1 2 3 20 20 H 1.08992 * 109.47457 * 300.00350 * 1 2 3 21 21 H 1.09004 * 109.47067 * 60.00369 * 1 2 3 22 22 H 1.09001 * 110.48009 * 214.35276 * 6 4 2 23 23 H 1.08995 * 110.48671 * 337.00091 * 6 4 2 24 24 H 1.09005 * 110.75790 * 279.62797 * 7 6 4 25 25 H 1.08997 * 110.90394 * 156.33225 * 7 6 4 26 26 H 1.09004 * 110.48415 * 203.37117 * 8 7 6 27 27 H 1.08997 * 110.59749 * 80.78237 * 8 7 6 28 28 H 0.97001 * 120.00019 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.6736 -2.0746 0.5022 6 6 2.5706 -1.7369 -1.4476 7 6 4.0096 -1.2176 -1.6976 8 6 4.7032 -1.4624 -0.3345 9 6 3.6157 -1.1309 0.7083 10 1 3.7286 -0.1024 1.0509 11 6 3.7136 -2.0780 1.8764 12 1 2.8938 -2.7441 2.1018 13 6 4.8496 -2.0941 2.6576 14 7 5.8476 -1.2827 2.3835 15 14 4.9706 -3.2675 4.1060 16 1 3.7232 -4.0677 4.2003 17 1 6.1282 -4.1770 3.9108 18 1 5.1569 -2.4910 5.3580 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 2.5355 -2.8226 -1.5377 23 1 1.8707 -1.2726 -2.1423 24 1 4.0000 -0.1551 -1.9409 25 1 4.4975 -1.7888 -2.4874 26 1 5.5593 -0.7979 -0.2173 27 1 5.0141 -2.5032 -0.2439 28 1 6.6467 -1.2937 2.9332 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238075395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -80.720982 kcal Electronic energy + Delta-G solvation = -11242.662894 eV Core-core repulsion = 9256.943609 eV Total energy + Delta-G solvation = -1985.719285 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.105 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.80305 -37.89847 -34.51577 -31.70424 -30.13562 -28.86281 -26.08133 -22.44856 -21.24632 -19.60985 -18.59113 -16.93201 -16.55213 -16.07656 -15.83401 -15.08828 -14.71283 -14.15604 -13.50493 -13.21895 -12.98517 -12.92024 -12.72272 -12.36112 -12.15734 -11.75518 -11.57628 -11.41409 -11.25732 -10.77294 -10.48479 -10.18446 -8.11286 -6.22338 1.18481 1.40367 1.41173 1.53211 2.42904 3.18683 3.39580 3.95365 4.07052 4.23540 4.43729 4.69422 4.73507 4.83447 4.93244 5.00777 5.07180 5.09300 5.20948 5.30850 5.42672 5.56276 5.66453 5.89139 6.01044 6.36220 6.78894 6.91659 7.45151 8.98444 Molecular weight = 182.10amu Principal moments of inertia in cm(-1) A = 0.045931 B = 0.013947 C = 0.012476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.468585 B = 2007.083340 C = 2243.832776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.357 3.643 3 O -0.511 6.511 4 C -0.144 4.144 5 H 0.101 0.899 6 C -0.090 4.090 7 C -0.126 4.126 8 C -0.087 4.087 9 C 0.044 3.956 10 H -0.009 1.009 11 C -0.529 4.529 12 H 0.064 0.936 13 C 0.003 3.997 14 N -0.925 5.925 15 Si 0.958 3.042 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.285 1.285 19 H 0.105 0.895 20 H 0.093 0.907 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.018 0.982 27 H 0.038 0.962 28 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -2.821 -6.030 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.237 3.763 3 O -0.389 6.389 4 C -0.163 4.163 5 H 0.119 0.881 6 C -0.128 4.128 7 C -0.164 4.164 8 C -0.126 4.126 9 C 0.025 3.975 10 H 0.009 0.991 11 C -0.567 4.567 12 H 0.083 0.917 13 C -0.195 4.195 14 N -0.565 5.565 15 Si 0.783 3.217 16 H -0.182 1.182 17 H -0.207 1.207 18 H -0.212 1.212 19 H 0.124 0.876 20 H 0.112 0.888 21 H 0.124 0.876 22 H 0.107 0.893 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.037 0.963 27 H 0.057 0.943 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.151 -2.234 -5.968 11.151 hybrid contribution 0.761 -0.243 1.113 1.370 sum -8.390 -2.477 -4.855 10.005 Atomic orbital electron populations 1.22265 0.90989 1.06394 1.05182 1.25377 0.93711 0.89750 0.67496 1.90332 1.73588 1.36625 1.38317 1.22601 0.98408 0.96511 0.98820 0.88116 1.22171 0.95979 1.01777 0.92855 1.22597 0.96794 0.99787 0.97187 1.22078 0.97663 0.98479 0.94339 1.19246 0.90139 0.94912 0.93193 0.99073 1.21755 1.01697 1.20637 1.12641 0.91736 1.25900 0.95714 0.97428 1.00483 1.70170 1.06600 1.39232 1.40501 0.85501 0.78481 0.78803 0.78871 1.18177 1.20686 1.21168 0.87585 0.88834 0.87587 0.89321 0.89942 0.93513 0.90366 0.96298 0.94312 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.57 10.33 71.23 0.74 -3.84 15 2 C 0.36 13.31 6.18 29.10 0.18 13.49 15 3 O -0.51 -23.89 16.43 -1.47 -0.02 -23.92 15 4 C -0.14 -5.70 2.81 -10.82 -0.03 -5.73 15 5 H 0.10 3.66 7.29 -2.38 -0.02 3.65 15 6 C -0.09 -2.94 6.37 31.71 0.20 -2.74 15 7 C -0.13 -4.84 6.91 31.93 0.22 -4.62 15 8 C -0.09 -4.37 5.44 31.67 0.17 -4.20 15 9 C 0.04 2.29 2.33 -10.82 -0.03 2.27 15 10 H -0.01 -0.56 6.81 -2.39 -0.02 -0.57 15 11 C -0.53 -29.55 8.37 25.60 0.21 -29.34 15 12 H 0.06 3.39 7.33 -2.91 -0.02 3.37 15 13 C 0.00 0.16 5.33 84.65 0.45 0.61 15 14 N -0.93 -56.82 12.43 21.45 0.27 -56.55 15 15 Si 0.96 44.35 29.54 68.60 2.03 46.38 15 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 19 H 0.11 1.95 7.95 -2.39 -0.02 1.93 15 20 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 23 H 0.08 2.16 7.83 -2.39 -0.02 2.14 15 24 H 0.05 1.85 8.14 -2.38 -0.02 1.83 15 25 H 0.08 2.54 8.14 -2.39 -0.02 2.53 15 26 H 0.02 1.03 7.97 -2.38 -0.02 1.01 15 27 H 0.04 1.98 7.85 -2.39 -0.02 1.96 15 28 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 Total: -1.00 -69.84 235.83 5.51 -64.33 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 1.12 Total: 3.85 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 2.12 Total: -34.09 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.27 Total: -56.55 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.02 Total: -23.92 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -69.84 5.51 -64.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238075395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.394 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds