Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31987 * 1 3 3 N 1.38909 * 120.00205 * 2 1 4 4 C 1.46970 * 120.59375 * 5.20909 * 3 2 1 5 5 C 1.53369 * 108.63753 * 235.24979 * 4 3 2 6 6 N 1.46965 * 108.63266 * 310.57510 * 5 4 3 7 7 C 1.36933 * 120.59702 * 235.20217 * 6 5 4 8 8 H 1.08006 * 120.00420 * 148.78603 * 7 6 5 9 9 C 1.38807 * 119.99953 * 328.51810 * 7 6 5 10 10 N 1.31621 * 120.00083 * 348.72360 * 9 7 6 11 11 Si 1.86804 * 120.00340 * 168.73049 * 9 7 6 12 12 H 1.48497 * 109.47161 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47156 * 119.99899 * 11 9 7 14 14 H 1.48504 * 109.47015 * 239.99624 * 11 9 7 15 15 C 1.46974 * 118.81286 * 55.47582 * 6 5 4 16 16 C 1.46965 * 120.59508 * 185.23157 * 3 2 1 17 17 H 1.08005 * 119.99734 * 354.04655 * 1 2 3 18 18 H 1.07997 * 120.00434 * 174.04307 * 1 2 3 19 19 H 1.08003 * 119.99954 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.60861 * 115.50163 * 4 3 2 21 21 H 1.08999 * 109.61060 * 354.99354 * 4 3 2 22 22 H 1.08995 * 109.61128 * 190.83483 * 5 4 3 23 23 H 1.08998 * 109.75355 * 70.40085 * 5 4 3 24 24 H 0.96993 * 120.00560 * 180.02562 * 10 9 7 25 25 H 1.08998 * 109.60736 * 64.27092 * 15 6 5 26 26 H 1.09001 * 109.60552 * 184.77844 * 15 6 5 27 27 H 1.08996 * 109.60979 * 244.49678 * 16 3 2 28 28 H 1.08995 * 109.60880 * 4.83613 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3199 0.0000 0.0000 3 7 2.0145 1.2030 0.0000 4 6 1.2974 2.4807 0.1149 5 6 1.6845 3.3686 -1.0742 6 7 3.1495 3.3865 -1.1896 7 6 3.8342 4.5723 -1.1905 8 1 4.8324 4.6200 -0.7808 9 6 3.2475 5.7120 -1.7231 10 7 2.1366 5.6150 -2.4222 11 14 4.0348 7.3836 -1.4478 12 1 5.2670 7.2226 -0.6349 13 1 4.3815 7.9893 -2.7586 14 1 3.0812 8.2677 -0.7307 15 6 3.8662 2.1090 -1.3101 16 6 3.4795 1.2208 -0.1153 17 1 -0.5400 0.9303 0.0970 18 1 -0.5401 -0.9302 -0.0971 19 1 1.8599 -0.9353 -0.0004 20 1 1.5761 2.9742 1.0459 21 1 0.2227 2.2996 0.1015 22 1 1.3183 4.3818 -0.9088 23 1 1.2504 2.9677 -1.9901 24 1 1.7268 6.4113 -2.7947 25 1 3.5839 1.6176 -2.2412 26 1 4.9410 2.2902 -1.3004 27 1 3.9135 1.6246 0.7993 28 1 3.8460 0.2072 -0.2777 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238101756.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = 40.181311 kcal Electronic energy + Delta-G solvation = -11279.611446 eV Core-core repulsion = 9331.427629 eV Total energy + Delta-G solvation = -1948.183817 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.63843 -36.48493 -33.73451 -31.92918 -31.18963 -27.82105 -25.15764 -24.44629 -21.88026 -20.10260 -18.57224 -17.44790 -16.62636 -16.14891 -15.50076 -15.38576 -14.86176 -14.73340 -13.79600 -13.29932 -13.04819 -12.75522 -12.50710 -12.43703 -12.11941 -11.95983 -11.65090 -11.48737 -11.36616 -10.62076 -8.82554 -8.14990 -7.80072 -5.42776 1.45911 1.47068 1.58154 1.84926 2.42824 2.54926 3.26245 3.64374 4.13716 4.30762 4.33406 4.54419 4.61797 4.69646 4.82869 4.88135 5.10703 5.25989 5.33545 5.53042 5.57744 5.59402 5.71487 6.36960 6.61571 6.98408 7.10901 7.79118 8.34096 9.15987 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.074979 B = 0.011881 C = 0.010928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.348708 B = 2356.147446 C = 2561.533472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.364 4.364 2 C 0.130 3.870 3 N -0.639 5.639 4 C 0.108 3.892 5 C 0.168 3.832 6 N -0.612 5.612 7 C -0.266 4.266 8 H 0.069 0.931 9 C -0.051 4.051 10 N -0.938 5.938 11 Si 0.974 3.026 12 H -0.264 1.264 13 H -0.291 1.291 14 H -0.289 1.289 15 C 0.124 3.876 16 C 0.120 3.880 17 H 0.078 0.922 18 H 0.117 0.883 19 H 0.156 0.844 20 H 0.045 0.955 21 H 0.085 0.915 22 H 0.064 0.936 23 H -0.009 1.009 24 H 0.251 0.749 25 H 0.011 0.989 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -8.225 5.133 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.411 4.411 2 C 0.011 3.989 3 N -0.350 5.350 4 C -0.017 4.017 5 C 0.041 3.959 6 N -0.336 5.336 7 C -0.396 4.396 8 H 0.087 0.913 9 C -0.246 4.246 10 N -0.584 5.584 11 Si 0.801 3.199 12 H -0.188 1.188 13 H -0.218 1.218 14 H -0.216 1.216 15 C -0.002 4.002 16 C -0.005 4.005 17 H 0.096 0.904 18 H 0.135 0.865 19 H 0.173 0.827 20 H 0.063 0.937 21 H 0.103 0.897 22 H 0.083 0.917 23 H 0.009 0.991 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.004 -8.002 5.066 9.523 hybrid contribution 0.043 1.142 -0.291 1.180 sum 1.047 -6.860 4.775 8.423 Atomic orbital electron populations 1.23322 0.94741 1.01854 1.21232 1.21490 0.93671 0.88786 0.94976 1.46788 1.05803 1.03657 1.78794 1.22051 0.96878 0.84679 0.98062 1.20937 0.84016 0.98003 0.92907 1.44236 1.02356 1.01715 1.85310 1.19595 1.00434 0.87316 1.32236 0.91311 1.25995 0.98835 1.02599 0.97204 1.70151 1.22122 1.28597 1.37541 0.85114 0.78146 0.79483 0.77127 1.18849 1.21829 1.21571 1.21609 0.96402 0.86796 0.95417 1.22059 0.79993 1.00627 0.97793 0.90398 0.86484 0.82666 0.93712 0.89729 0.91750 0.99097 0.93988 0.97072 0.91241 0.93009 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -10.95 14.06 66.92 0.94 -10.00 15 2 C 0.13 3.88 10.41 82.67 0.86 4.74 15 3 N -0.64 -22.82 3.06 -701.85 -2.15 -24.97 15 4 C 0.11 4.41 6.51 86.41 0.56 4.97 15 5 C 0.17 8.50 5.46 86.41 0.47 8.97 15 6 N -0.61 -31.61 2.95 -697.34 -2.06 -33.67 15 7 C -0.27 -14.74 9.57 84.03 0.80 -13.94 15 8 H 0.07 3.68 7.86 -2.91 -0.02 3.66 15 9 C -0.05 -2.87 5.04 84.86 0.43 -2.45 15 10 N -0.94 -56.26 11.06 21.65 0.24 -56.02 15 11 Si 0.97 44.90 29.57 68.60 2.03 46.93 15 12 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 13 H -0.29 -13.44 7.11 99.48 0.71 -12.74 15 14 H -0.29 -13.25 7.11 99.48 0.71 -12.55 15 15 C 0.12 5.17 6.70 86.56 0.58 5.75 15 16 C 0.12 3.99 6.70 86.56 0.58 4.57 15 17 H 0.08 2.58 5.61 -2.91 -0.02 2.57 15 18 H 0.12 2.97 8.06 -2.91 -0.02 2.95 15 19 H 0.16 3.49 7.97 -2.91 -0.02 3.47 15 20 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.08 3.19 5.38 -2.39 -0.01 3.18 15 22 H 0.06 3.63 6.04 -2.39 -0.01 3.62 15 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 24 H 0.25 14.49 8.31 -92.71 -0.77 13.72 15 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 26 H 0.07 2.73 7.93 -2.39 -0.02 2.71 15 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.10 2.60 7.87 -2.39 -0.02 2.58 15 Total: -1.00 -63.68 230.01 4.41 -59.27 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.12 Total: 5.86 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.23 Total: 2.61 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.97 Total: -114.66 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.68 4.41 -59.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238101756.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.450 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds