Wall clock time and date at job start Mon Mar 30 2020 01:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.37002 * 120.00025 * 179.97438 * 11 10 9 13 13 N 1.28715 * 124.49183 * 359.70966 * 12 11 10 14 14 C 1.46741 * 112.32101 * 179.97438 * 13 12 11 15 15 C 1.54641 * 105.21504 * 344.09207 * 14 13 12 16 16 C 1.51267 * 124.49579 * 179.97438 * 12 11 10 17 17 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 23 23 H 1.09002 * 110.45977 * 225.05759 * 14 13 12 24 24 H 1.09000 * 110.17939 * 102.98056 * 14 13 12 25 25 H 1.08994 * 111.11774 * 266.09127 * 15 14 13 26 26 H 1.08995 * 111.11850 * 141.94418 * 15 14 13 27 27 H 1.08997 * 110.54861 * 314.64150 * 16 12 11 28 28 H 1.08997 * 110.54430 * 77.30631 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1979 -6.1172 0.0013 13 7 3.4810 -6.2180 -0.0051 14 6 3.9303 -7.6150 -0.0034 15 6 2.6906 -8.4395 0.4145 16 6 1.5465 -7.4825 0.0023 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5575 -0.8880 19 1 0.6247 -2.5564 0.8919 20 1 2.8714 -3.6047 -0.8890 21 1 2.8726 -3.6039 0.8910 22 1 0.5429 -4.9308 0.0020 23 1 4.7376 -7.7547 0.7157 24 1 4.2590 -7.9055 -1.0012 25 1 2.6827 -8.6193 1.4895 26 1 2.6377 -9.3770 -0.1390 27 1 0.7354 -7.5189 0.7295 28 1 1.1782 -7.7313 -0.9929 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238544350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:57 Heat of formation + Delta-G solvation = 6.349106 kcal Electronic energy + Delta-G solvation = -10488.993844 eV Core-core repulsion = 8539.342953 eV Total energy + Delta-G solvation = -1949.650891 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.96888 -35.32140 -32.88794 -29.98035 -29.54191 -26.95937 -24.27319 -21.68180 -20.57381 -18.87797 -16.30734 -15.94397 -15.70627 -14.53634 -14.17321 -13.82766 -13.48312 -12.79899 -12.36241 -12.07945 -11.69248 -11.21470 -11.12008 -11.02314 -10.57878 -10.53123 -9.61958 -9.52148 -9.27048 -8.86401 -8.39561 -7.43744 -6.05147 -4.07408 2.99207 3.32203 3.38041 3.42440 3.83960 4.45976 4.56482 4.78541 4.96141 5.31883 5.47542 5.69307 5.77501 5.82264 5.91514 6.17321 6.18901 6.49866 6.50382 6.88176 7.47077 7.61459 7.70200 7.93615 8.15467 8.32855 8.73277 8.99053 9.57032 11.06640 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.102396 B = 0.007223 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.382382 B = 3875.761674 C = 4106.075023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.136 3.864 11 N -0.706 5.706 12 C 0.379 3.621 13 N -0.605 5.605 14 C 0.048 3.952 15 C -0.148 4.148 16 C -0.133 4.133 17 H 0.261 0.739 18 H 0.021 0.979 19 H 0.021 0.979 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.403 0.597 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 -13.093 0.152 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.077 0.923 9 C -0.027 4.027 10 C 0.014 3.986 11 N -0.342 5.342 12 C 0.098 3.902 13 N -0.335 5.335 14 C -0.084 4.084 15 C -0.187 4.187 16 C -0.174 4.174 17 H 0.071 0.929 18 H 0.039 0.961 19 H 0.039 0.961 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.238 0.762 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.506 -12.358 0.148 12.610 hybrid contribution -0.573 0.224 -0.019 0.616 sum 1.932 -12.134 0.129 12.288 Atomic orbital electron populations 1.69957 1.06091 1.26783 1.50621 1.25000 0.94882 0.99382 0.95094 0.86519 0.79851 0.83057 0.78165 1.20592 1.21212 1.19726 1.21067 0.93249 0.90416 1.51012 0.92261 1.19331 0.94353 0.91304 0.97683 1.21611 0.95546 0.81067 1.00378 1.44215 1.08330 1.02958 1.78653 1.21998 0.90929 0.87097 0.90193 1.73171 1.10935 1.18726 1.30670 1.22781 0.97112 0.88013 1.00469 1.22986 0.95586 0.98499 1.01676 1.22248 0.99610 0.92603 1.02920 0.92911 0.96088 0.96067 0.93061 0.93045 0.76205 0.90968 0.91841 0.90962 0.90585 0.90102 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 15 10 C 0.14 3.00 5.83 -4.04 -0.02 2.97 15 11 N -0.71 -12.82 5.65 -57.98 -0.33 -13.15 15 12 C 0.38 6.41 7.92 -154.78 -1.23 5.18 15 13 N -0.61 -11.17 10.94 -56.84 -0.62 -11.79 15 14 C 0.05 0.67 7.81 -3.05 -0.02 0.65 15 15 C -0.15 -1.66 7.25 -24.95 -0.18 -1.84 15 16 C -0.13 -1.63 6.89 -26.68 -0.18 -1.81 15 17 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 18 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 19 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.05 1.18 8.14 -51.93 -0.42 0.75 15 21 H 0.05 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.40 6.47 8.59 -40.82 -0.35 6.12 15 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 15 LS Contribution 242.14 15.07 3.65 3.65 Total: -1.00 -30.87 242.14 -7.89 -38.77 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.12 Total: -0.14 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.19 Total: -8.16 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.21 Total: -50.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.87 -7.89 -38.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238544350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.115 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds