Wall clock time and date at job start Mon Mar 30 2020 01:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.37002 * 120.00025 * 179.97438 * 11 10 9 13 13 N 1.28715 * 124.49183 * 359.70966 * 12 11 10 14 14 C 1.46741 * 112.32101 * 179.97438 * 13 12 11 15 15 C 1.54641 * 105.21504 * 344.09207 * 14 13 12 16 16 C 1.51267 * 124.49579 * 179.97438 * 12 11 10 17 17 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 23 23 H 1.09002 * 110.45977 * 225.05759 * 14 13 12 24 24 H 1.09000 * 110.17939 * 102.98056 * 14 13 12 25 25 H 1.08994 * 111.11774 * 266.09127 * 15 14 13 26 26 H 1.08995 * 111.11850 * 141.94418 * 15 14 13 27 27 H 1.08997 * 110.54861 * 314.64150 * 16 12 11 28 28 H 1.08997 * 110.54430 * 77.30631 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1979 -6.1172 0.0013 13 7 3.4810 -6.2180 -0.0051 14 6 3.9303 -7.6150 -0.0034 15 6 2.6906 -8.4395 0.4145 16 6 1.5465 -7.4825 0.0023 17 1 -0.4850 0.8400 -0.0004 18 1 0.6241 -2.5575 -0.8880 19 1 0.6247 -2.5564 0.8919 20 1 2.8714 -3.6047 -0.8890 21 1 2.8726 -3.6039 0.8910 22 1 0.5429 -4.9308 0.0020 23 1 4.7376 -7.7547 0.7157 24 1 4.2590 -7.9055 -1.0012 25 1 2.6827 -8.6193 1.4895 26 1 2.6377 -9.3770 -0.1390 27 1 0.7354 -7.5189 0.7295 28 1 1.1782 -7.7313 -0.9929 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238544350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:56 Heat of formation + Delta-G solvation = -14.933728 kcal Electronic energy + Delta-G solvation = -10489.916737 eV Core-core repulsion = 8539.342953 eV Total energy + Delta-G solvation = -1950.573784 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 182.111 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.18239 -36.93437 -34.89900 -31.74485 -30.73379 -28.35397 -26.16906 -23.19175 -22.01455 -20.27821 -18.40672 -17.20550 -16.84164 -16.42555 -15.83699 -15.53831 -14.72382 -14.27315 -13.79434 -13.49057 -13.23734 -12.96752 -12.71734 -12.45908 -12.17848 -12.13062 -11.52815 -11.38767 -11.06495 -10.56727 -10.11448 -8.87844 -8.23517 -6.33968 1.41564 1.42470 1.54086 1.71693 2.34268 2.53306 3.10965 3.49171 3.83428 4.09935 4.46228 4.57281 4.59300 4.72129 4.80009 4.85917 4.92494 5.00933 5.04037 5.25832 5.44438 5.62195 5.76411 6.08005 6.25521 6.75544 6.79765 7.35075 7.44636 8.88598 Molecular weight = 182.11amu Principal moments of inertia in cm(-1) A = 0.102396 B = 0.007223 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.382382 B = 3875.761674 C = 4106.075023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.021 3.979 10 C 0.161 3.839 11 N -0.708 5.708 12 C 0.367 3.633 13 N -0.654 5.654 14 C 0.040 3.960 15 C -0.136 4.136 16 C -0.125 4.125 17 H 0.266 0.734 18 H 0.005 0.995 19 H 0.005 0.995 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.413 0.587 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 -14.017 0.150 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.016 4.016 10 C 0.037 3.963 11 N -0.346 5.346 12 C 0.087 3.913 13 N -0.384 5.384 14 C -0.091 4.091 15 C -0.175 4.175 16 C -0.165 4.165 17 H 0.075 0.925 18 H 0.024 0.976 19 H 0.024 0.976 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.249 0.751 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.699 -13.320 0.146 13.591 hybrid contribution -0.599 0.463 -0.025 0.758 sum 2.100 -12.857 0.121 13.028 Atomic orbital electron populations 1.70063 1.07586 1.27985 1.51127 1.25896 0.95811 1.03159 0.94414 0.85428 0.78612 0.78354 0.78549 1.19711 1.20433 1.19051 1.21475 0.93538 0.91992 1.51408 0.92407 1.19141 0.94371 0.92105 0.96010 1.21012 0.94343 0.82004 0.98945 1.43970 1.08707 1.02378 1.79535 1.22520 0.91336 0.88087 0.89381 1.73084 1.12376 1.22176 1.30773 1.22874 0.98533 0.86551 1.01139 1.22983 0.93072 0.98910 1.02562 1.22289 1.00219 0.89424 1.04614 0.92549 0.97636 0.97619 0.94464 0.94476 0.75057 0.90758 0.91139 0.90286 0.87570 0.88213 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 15 2 C 0.01 0.33 5.46 84.66 0.46 0.79 15 3 Si 0.97 44.36 29.54 68.60 2.03 46.39 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 7 C -0.55 -31.34 9.11 25.60 0.23 -31.11 15 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 15 9 C 0.02 1.11 5.09 29.85 0.15 1.26 15 10 C 0.16 7.23 5.83 86.38 0.50 7.74 15 11 N -0.71 -25.65 5.65 -337.35 -1.91 -27.56 15 12 C 0.37 12.01 7.92 138.18 1.09 13.11 15 13 N -0.65 -23.74 10.94 -333.75 -3.65 -27.39 15 14 C 0.04 1.05 7.81 86.89 0.68 1.73 15 15 C -0.14 -2.60 7.25 31.75 0.23 -2.37 15 16 C -0.12 -2.69 6.89 30.62 0.21 -2.48 15 17 H 0.27 14.87 8.31 -92.71 -0.77 14.10 15 18 H 0.01 0.29 8.14 -2.39 -0.02 0.27 15 19 H 0.01 0.30 8.14 -2.39 -0.02 0.28 15 20 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.41 13.13 8.59 -92.71 -0.80 12.33 15 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.07 1.73 8.14 -2.39 -0.02 1.72 15 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 15 27 H 0.10 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 Total: -1.00 -66.16 242.14 0.66 -65.50 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.34 Total: 9.55 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 3.56 Total: -11.33 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -5.27 Total: -110.11 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -66.16 0.66 -65.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238544350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.570 kcal (2) G-P(sol) polarization free energy of solvation -66.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds