Wall clock time and date at job start Mon Mar 30 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 11 11 N 1.46902 * 109.47091 * 60.00543 * 9 7 2 12 12 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 13 13 C 1.34524 * 126.56992 * 265.02746 * 12 9 7 14 14 O 1.34275 * 108.51771 * 179.97438 * 13 12 9 15 15 C 1.34568 * 109.50908 * 0.02562 * 14 13 12 16 16 C 1.34827 * 108.33801 * 359.75552 * 15 14 13 17 17 O 1.36182 * 126.61191 * 180.25393 * 16 15 14 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.00904 * 110.99840 * 296.04141 * 11 9 7 20 20 H 1.00902 * 111.00267 * 59.99500 * 11 9 7 21 21 H 1.07997 * 125.74042 * 359.97438 * 13 12 9 22 22 H 1.07998 * 125.82507 * 179.97438 * 15 14 13 23 23 H 0.96700 * 114.00078 * 270.14131 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6281 -2.5552 0.8979 11 7 0.4015 -2.5793 -1.1905 12 6 2.2302 -3.6446 0.0028 13 6 2.6749 -4.3166 -1.0745 14 8 3.5342 -5.2625 -0.6623 15 6 3.6511 -5.2105 0.6773 16 6 2.8625 -4.2166 1.1337 17 8 2.7032 -3.8374 2.4319 18 1 -0.4850 0.8401 0.0004 19 1 -0.3058 -1.8598 -1.1805 20 1 0.9560 -2.5296 -2.0321 21 1 2.3889 -4.1272 -2.0985 22 1 4.2733 -5.8527 1.2830 23 1 1.9889 -4.2994 2.8917 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238598854.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:13 Heat of formation + Delta-G solvation = -57.233424 kcal Electronic energy + Delta-G solvation = -10961.590480 eV Core-core repulsion = 8775.630687 eV Total energy + Delta-G solvation = -2185.959793 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.34416 -38.30204 -36.85761 -33.79294 -31.79598 -29.65593 -28.06991 -24.67025 -22.41797 -21.01302 -19.23559 -18.64850 -17.44530 -16.71036 -16.49359 -15.87207 -15.39741 -14.90061 -14.55077 -14.46537 -13.86013 -13.21991 -12.86020 -12.77229 -12.01128 -11.79478 -11.35365 -10.78537 -10.14603 -9.32761 -9.20061 -8.14800 -6.39269 0.88890 1.33636 1.36139 1.47670 1.71474 2.31865 2.37218 3.02135 3.42846 4.09156 4.31253 4.53924 4.74035 5.05856 5.27789 5.40576 5.61863 5.69843 6.03134 6.25941 6.62525 6.88919 6.91009 7.09080 7.36649 8.80283 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.051424 B = 0.013385 C = 0.012541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.361789 B = 2091.380684 C = 2232.123027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.037 0.963 9 C 0.277 3.723 10 H 0.005 0.995 11 N -0.839 5.839 12 C -0.185 4.185 13 C -0.039 4.039 14 O -0.173 6.173 15 C -0.062 4.062 16 C -0.015 4.015 17 O -0.483 6.483 18 H 0.268 0.732 19 H 0.347 0.653 20 H 0.319 0.681 21 H 0.220 0.780 22 H 0.244 0.756 23 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -7.422 -0.137 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.055 0.945 9 C 0.166 3.834 10 H 0.023 0.977 11 N -0.368 5.368 12 C -0.187 4.187 13 C -0.106 4.106 14 O -0.070 6.070 15 C -0.129 4.129 16 C -0.061 4.061 17 O -0.293 6.293 18 H 0.078 0.922 19 H 0.161 0.839 20 H 0.129 0.871 21 H 0.236 0.764 22 H 0.260 0.740 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.719 -7.853 -0.160 9.163 hybrid contribution 0.028 1.927 0.332 1.955 sum 4.747 -5.926 0.172 7.595 Atomic orbital electron populations 1.69831 1.06788 1.27972 1.51029 1.25732 0.95822 1.02286 0.94008 0.85482 0.78582 0.79393 0.77984 1.20168 1.19733 1.20457 1.22004 0.92949 0.92686 1.51727 0.94470 1.17030 0.88058 0.87940 0.90331 0.97659 1.59458 1.18028 1.55343 1.03964 1.21245 1.02655 1.00701 0.94148 1.23744 0.95186 0.91529 1.00139 1.84103 1.52783 1.47735 1.22337 1.24580 1.05183 1.01573 0.81609 1.18855 1.03274 0.98697 0.85324 1.84845 1.57833 1.67084 1.19506 0.92216 0.83862 0.87109 0.76408 0.73983 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.71 11.53 21.45 0.25 -51.46 14 2 C 0.02 1.19 5.38 84.66 0.46 1.64 14 3 Si 0.96 44.28 29.54 68.60 2.03 46.30 14 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 14 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 14 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 14 7 C -0.55 -31.58 8.71 25.60 0.22 -31.35 14 8 H 0.04 2.20 7.74 -2.92 -0.02 2.18 14 9 C 0.28 14.57 3.22 43.42 0.14 14.71 14 10 H 0.01 0.33 8.14 -2.39 -0.02 0.31 14 11 N -0.84 -40.45 8.95 -174.96 -1.57 -42.01 14 12 C -0.19 -8.37 5.23 -19.88 -0.10 -8.47 14 13 C -0.04 -1.50 11.35 66.97 0.76 -0.74 14 14 O -0.17 -5.87 10.66 -4.82 -0.05 -5.92 14 15 C -0.06 -1.96 12.11 67.04 0.81 -1.15 14 16 C -0.01 -0.60 7.32 22.32 0.16 -0.43 14 17 O -0.48 -18.70 13.67 -95.63 -1.31 -20.01 14 18 H 0.27 14.28 8.31 -92.71 -0.77 13.51 14 19 H 0.35 18.00 7.07 -89.69 -0.63 17.37 14 20 H 0.32 14.14 8.00 -89.69 -0.72 13.42 14 21 H 0.22 7.13 7.37 -2.91 -0.02 7.11 14 22 H 0.24 5.09 8.06 -2.91 -0.02 5.07 14 23 H 0.40 11.21 9.07 -74.06 -0.67 10.54 14 Total: -1.00 -65.76 212.73 1.04 -64.72 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.76 Total: 34.18 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 2.45 Total: -25.79 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -1.32 Total: -93.48 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.36 Total: -25.93 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.76 1.04 -64.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598854.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.484 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds