Wall clock time and date at job start Mon Mar 30 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99772 * 2 1 4 4 H 1.48496 * 109.47051 * 264.99220 * 3 2 1 5 5 H 1.48502 * 109.47282 * 24.99337 * 3 2 1 6 6 H 1.48505 * 109.46845 * 144.99255 * 3 2 1 7 7 C 1.37880 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99611 * 186.53019 * 7 2 1 9 9 C 1.50702 * 119.99995 * 6.52088 * 7 2 1 10 10 H 1.09000 * 109.47288 * 305.17659 * 9 7 2 11 11 N 1.46902 * 109.46873 * 65.18116 * 9 7 2 12 12 C 1.50702 * 109.46964 * 185.17870 * 9 7 2 13 13 O 1.34571 * 125.83012 * 284.69353 * 12 9 7 14 14 C 1.34274 * 109.50444 * 179.85876 * 13 12 9 15 15 C 1.34522 * 108.52137 * 0.40529 * 14 13 12 16 16 C 1.34823 * 125.83097 * 104.99894 * 12 9 7 17 17 O 1.36193 * 126.61344 * 0.02562 * 16 12 9 18 18 H 0.96997 * 120.00422 * 359.97438 * 1 2 3 19 19 H 1.00897 * 111.00191 * 293.93854 * 11 9 7 20 20 H 1.00901 * 110.99813 * 57.89259 * 11 9 7 21 21 H 1.07998 * 125.73678 * 180.15800 * 14 13 12 22 22 H 1.07990 * 126.56557 * 179.77564 * 15 14 13 23 23 H 0.96694 * 113.99818 * 89.99719 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6024 1.9853 -1.3947 5 1 1.3976 2.6809 0.5916 6 1 3.4898 1.4730 0.8032 7 6 2.0046 -1.1941 -0.0005 8 1 3.0792 -1.1971 0.1058 9 6 1.2583 -2.4949 -0.1493 10 1 0.4848 -2.5596 0.6158 11 7 0.6377 -2.5539 -1.4795 12 6 2.2185 -3.6457 0.0085 13 8 3.1137 -4.0562 -0.9086 14 6 3.8008 -5.1043 -0.4266 15 6 3.3443 -5.3834 0.8077 16 6 2.3234 -4.4433 1.0904 17 8 1.5886 -4.3616 2.2342 18 1 -0.4850 0.8400 0.0004 19 1 -0.0815 -1.8527 -1.5744 20 1 1.3312 -2.4614 -2.2065 21 1 4.5849 -5.6365 -0.9445 22 1 3.6904 -6.1727 1.4584 23 1 0.7765 -4.8863 2.2182 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238600403.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:40 Heat of formation + Delta-G solvation = -34.835694 kcal Electronic energy + Delta-G solvation = -10972.481022 eV Core-core repulsion = 8787.492467 eV Total energy + Delta-G solvation = -2184.988555 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.80458 -36.64832 -34.68384 -31.46337 -31.26648 -28.25415 -25.79303 -22.56455 -21.05858 -19.72758 -17.46425 -16.75333 -15.68435 -15.02452 -14.80559 -14.17862 -13.90549 -13.09870 -12.83323 -12.26544 -12.15116 -11.33417 -11.05700 -10.97714 -10.25861 -10.09004 -9.64243 -9.00745 -8.68774 -7.69668 -7.28173 -6.17271 -4.30920 2.48330 3.12558 3.22539 3.28905 3.34133 3.79075 4.31254 4.91563 5.08337 5.58775 5.67510 6.00865 6.38778 6.57763 6.82904 6.96808 7.27240 7.69205 7.85020 8.03158 8.35576 8.54598 8.74278 8.93081 9.37618 10.83234 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.052501 B = 0.013081 C = 0.012817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.197568 B = 2140.054078 C = 2184.007302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.280 3.720 10 H 0.077 0.923 11 N -0.850 5.850 12 C 0.053 3.947 13 O -0.162 6.162 14 C -0.067 4.067 15 C -0.230 4.230 16 C -0.037 4.037 17 O -0.466 6.466 18 H 0.267 0.733 19 H 0.352 0.648 20 H 0.320 0.680 21 H 0.194 0.806 22 H 0.141 0.859 23 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -6.701 -0.700 7.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.171 3.829 10 H 0.095 0.905 11 N -0.378 5.378 12 C 0.001 3.999 13 O -0.058 6.058 14 C -0.135 4.135 15 C -0.249 4.249 16 C -0.083 4.083 17 O -0.272 6.272 18 H 0.077 0.923 19 H 0.166 0.834 20 H 0.130 0.870 21 H 0.211 0.789 22 H 0.159 0.841 23 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.397 -6.811 -0.569 7.632 hybrid contribution 0.588 1.361 0.100 1.486 sum 3.985 -5.450 -0.470 6.767 Atomic orbital electron populations 1.69861 1.05855 1.27542 1.49528 1.24994 0.94982 0.99438 0.93977 0.86447 0.79845 0.82423 0.78399 1.20371 1.20988 1.19776 1.21696 0.94321 0.90751 1.52131 0.92402 1.17742 0.89079 0.85405 0.90701 0.90527 1.59451 1.17325 1.56616 1.04427 1.23869 0.91717 0.97616 0.86722 1.84158 1.41075 1.39773 1.40758 1.23589 1.01246 0.92954 0.95684 1.21808 1.02115 1.03086 0.97927 1.18137 1.00343 1.00066 0.89757 1.84950 1.37557 1.71781 1.32876 0.92292 0.83414 0.87044 0.78890 0.84132 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 12.17 55.43 0.67 -23.98 14 2 C 0.07 1.90 5.34 -17.82 -0.10 1.81 14 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 14 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 14 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 14 7 C -0.55 -15.35 8.65 -34.44 -0.30 -15.65 14 8 H 0.06 1.66 7.75 -52.49 -0.41 1.26 14 9 C 0.28 7.25 3.03 -70.01 -0.21 7.04 14 10 H 0.08 2.14 7.94 -51.93 -0.41 1.73 14 11 N -0.85 -20.39 9.19 -6.65 -0.06 -20.45 14 12 C 0.05 1.26 6.10 -35.52 -0.22 1.05 14 13 O -0.16 -3.51 10.66 5.05 0.05 -3.46 14 14 C -0.07 -1.18 12.08 29.42 0.36 -0.82 14 15 C -0.23 -4.20 10.92 -39.60 -0.43 -4.63 14 16 C -0.04 -0.80 7.28 -39.50 -0.29 -1.08 14 17 O -0.47 -9.57 13.49 -20.36 -0.27 -9.85 14 18 H 0.27 7.03 8.31 -40.82 -0.34 6.69 14 19 H 0.35 8.74 7.80 -39.29 -0.31 8.43 14 20 H 0.32 7.43 8.98 -39.29 -0.35 7.08 14 21 H 0.19 2.38 8.06 -52.49 -0.42 1.96 14 22 H 0.14 2.13 8.06 -52.49 -0.42 1.71 14 23 H 0.37 5.71 9.07 45.56 0.41 6.12 14 LS Contribution 215.74 15.07 3.25 3.25 Total: -1.00 -30.27 215.74 -3.61 -33.88 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -1.05 Total: 16.67 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.19 Total: -12.29 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.61 Total: -44.43 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.22 Total: -13.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -30.27 -3.61 -33.88 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238600403.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.956 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds