Wall clock time and date at job start Mon Mar 30 2020 02:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99575 * 2 1 4 4 H 1.48502 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47400 * 299.99692 * 3 2 1 6 6 H 1.48497 * 109.47075 * 59.99821 * 3 2 1 7 7 C 1.37869 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00088 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00028 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.47161 * 59.99702 * 9 7 2 11 11 N 1.46908 * 109.46908 * 299.99815 * 9 7 2 12 12 C 1.50697 * 109.47178 * 179.97438 * 9 7 2 13 13 C 1.34525 * 125.74143 * 259.99773 * 12 9 7 14 14 C 1.41633 * 106.86715 * 179.73632 * 13 12 9 15 15 O 1.36181 * 126.61476 * 179.97438 * 14 13 12 16 16 C 1.34823 * 106.76720 * 359.97438 * 14 13 12 17 17 O 1.34276 * 125.74476 * 79.69051 * 12 9 7 18 18 H 0.97001 * 119.99986 * 0.02562 * 1 2 3 19 19 H 1.00901 * 111.00093 * 299.99913 * 11 9 7 20 20 H 1.00897 * 110.99807 * 63.95467 * 11 9 7 21 21 H 1.07999 * 126.56076 * 359.71509 * 13 12 9 22 22 H 0.96698 * 114.00071 * 90.00094 * 15 14 13 23 23 H 1.08000 * 125.82950 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1998 12 6 2.2304 -3.6445 0.0005 13 6 2.5970 -4.3650 -1.0748 14 6 3.5330 -5.3279 -0.6246 15 8 4.1616 -6.2669 -1.3847 16 6 3.6817 -5.1356 0.7015 17 8 2.8884 -4.1140 1.0728 18 1 -0.4850 0.8401 -0.0004 19 1 0.9638 -2.5251 2.0391 20 1 -0.3012 -1.8572 1.1908 21 1 2.2446 -4.2344 -2.0872 22 1 5.0019 -5.9706 -1.7604 23 1 4.3270 -5.7045 1.3544 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238617589.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:42 Heat of formation + Delta-G solvation = -59.234259 kcal Electronic energy + Delta-G solvation = -10810.736270 eV Core-core repulsion = 8624.689714 eV Total energy + Delta-G solvation = -2186.046556 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.41451 -38.32954 -36.75705 -33.54357 -32.70386 -29.86860 -27.88793 -24.46391 -22.65735 -21.50020 -19.01999 -18.44493 -17.62594 -16.81850 -16.67535 -16.07671 -15.37379 -14.83097 -14.66337 -14.28355 -13.55317 -13.38436 -12.91937 -12.81571 -12.15179 -11.99317 -11.48236 -10.81768 -10.49246 -9.46298 -9.15761 -8.20442 -6.47786 0.87217 1.37090 1.39697 1.50699 1.59534 2.21843 2.36208 2.98114 3.28508 4.03669 4.20552 4.46726 4.69662 4.90569 5.11430 5.34984 5.46607 5.56495 5.87036 6.30937 6.49720 6.76926 6.84516 7.00368 7.28431 8.75149 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.062025 B = 0.011438 C = 0.010688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.324795 B = 2447.438496 C = 2619.040771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.026 3.974 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.569 4.569 8 H 0.049 0.951 9 C 0.278 3.722 10 H 0.043 0.957 11 N -0.843 5.843 12 C 0.049 3.951 13 C -0.275 4.275 14 C 0.004 3.996 15 O -0.478 6.478 16 C -0.082 4.082 17 O -0.175 6.175 18 H 0.272 0.728 19 H 0.323 0.677 20 H 0.353 0.647 21 H 0.146 0.854 22 H 0.404 0.596 23 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -5.051 0.228 8.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.608 4.608 8 H 0.067 0.933 9 C 0.168 3.832 10 H 0.061 0.939 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.295 4.295 14 C -0.042 4.042 15 O -0.288 6.288 16 C -0.149 4.149 17 O -0.071 6.071 18 H 0.082 0.918 19 H 0.132 0.868 20 H 0.168 0.832 21 H 0.164 0.836 22 H 0.261 0.739 23 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.252 -5.905 0.373 8.608 hybrid contribution 1.041 1.983 -0.369 2.270 sum 7.293 -3.922 0.004 8.281 Atomic orbital electron populations 1.69824 1.06930 1.28525 1.49820 1.25750 0.95863 1.02492 0.93385 0.85352 0.78605 0.78698 0.78021 1.19746 1.20119 1.20022 1.21936 0.93483 0.91878 1.53544 0.93314 1.17545 0.87320 0.86219 0.92124 0.93880 1.59406 1.18191 1.55668 1.03988 1.23026 0.96132 0.96710 0.84360 1.21780 1.06586 1.00747 1.00426 1.18511 1.00282 0.94579 0.90818 1.84800 1.40249 1.36301 1.67465 1.24742 1.00176 0.93382 0.96622 1.84122 1.46504 1.40347 1.36112 0.91807 0.86788 0.83158 0.83640 0.73916 0.74261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.37 11.54 21.45 0.25 -49.13 14 2 C 0.03 1.39 5.38 84.65 0.46 1.85 14 3 Si 0.97 42.02 29.54 68.60 2.03 44.05 14 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 14 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 14 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 14 7 C -0.57 -30.94 8.71 25.60 0.22 -30.72 14 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 14 9 C 0.28 14.41 3.17 43.42 0.14 14.55 14 10 H 0.04 2.42 8.13 -2.39 -0.02 2.40 14 11 N -0.84 -41.67 9.18 -174.94 -1.61 -43.28 14 12 C 0.05 2.28 6.08 24.83 0.15 2.43 14 13 C -0.28 -11.58 10.81 22.26 0.24 -11.34 14 14 C 0.00 0.15 7.36 22.32 0.16 0.32 14 15 O -0.48 -13.79 13.67 -95.61 -1.31 -15.09 14 16 C -0.08 -2.75 12.11 67.04 0.81 -1.94 14 17 O -0.17 -7.39 10.54 -4.78 -0.05 -7.44 14 18 H 0.27 13.86 8.31 -92.71 -0.77 13.09 14 19 H 0.32 15.37 8.88 -89.69 -0.80 14.58 14 20 H 0.35 18.18 7.08 -89.70 -0.63 17.55 14 21 H 0.15 5.86 8.06 -2.91 -0.02 5.84 14 22 H 0.40 7.26 9.07 -74.06 -0.67 6.59 14 23 H 0.24 5.45 8.06 -2.91 -0.02 5.42 14 Total: -1.00 -61.15 214.72 0.65 -60.50 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: -0.84 Total: 35.24 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 2.18 Total: -24.85 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -1.36 Total: -92.41 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.36 Total: -22.54 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -61.15 0.65 -60.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238617589.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.264 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds