Wall clock time and date at job start Mon Mar 30 2020 02:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99956 * 2 1 4 4 H 1.48502 * 109.47212 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47139 * 120.00031 * 3 2 1 6 6 H 1.48496 * 109.47066 * 240.00060 * 3 2 1 7 7 C 1.37881 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99896 * 344.30824 * 7 2 1 9 9 C 1.50703 * 119.99709 * 164.31002 * 7 2 1 10 10 H 1.08993 * 109.47558 * 54.85952 * 9 7 2 11 11 N 1.46899 * 109.46845 * 294.85824 * 9 7 2 12 12 C 1.50696 * 109.46997 * 174.86079 * 9 7 2 13 13 C 1.34443 * 126.55074 * 80.02042 * 12 9 7 14 14 O 1.34578 * 108.51964 * 180.02562 * 13 12 9 15 15 C 1.34327 * 109.47148 * 359.97438 * 14 13 12 16 16 O 1.35776 * 125.83728 * 180.02562 * 15 14 13 17 17 C 1.35131 * 108.31930 * 359.72417 * 15 14 13 18 18 H 0.96998 * 119.99309 * 174.83796 * 1 2 3 19 19 H 1.00893 * 111.00408 * 294.05692 * 11 9 7 20 20 H 1.00899 * 111.00143 * 58.01144 * 11 9 7 21 21 H 1.08004 * 125.74372 * 0.04061 * 13 12 9 22 22 H 0.96703 * 114.00139 * 359.97438 * 16 15 14 23 23 H 1.07997 * 126.60445 * 180.25906 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 1.4947 -2.1118 0.2539 9 6 3.4695 -1.2185 -0.3524 10 1 4.0100 -0.5245 0.2912 11 7 3.6417 -0.8201 -1.7558 12 6 4.0104 -2.6112 -0.1556 13 6 3.8820 -3.6472 -1.0028 14 8 4.5013 -4.7158 -0.4683 15 6 5.0305 -4.3789 0.7195 16 8 5.7280 -5.2040 1.5417 17 6 4.7558 -3.0765 0.9528 18 1 -0.4849 -0.8367 -0.0756 19 1 3.2320 -1.5008 -2.3778 20 1 3.2572 0.0980 -1.9209 21 1 3.3685 -3.6254 -1.9527 22 1 5.8282 -6.1042 1.2030 23 1 5.0464 -2.5025 1.8202 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624254.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:53 Heat of formation + Delta-G solvation = -58.600494 kcal Electronic energy + Delta-G solvation = -10834.678366 eV Core-core repulsion = 8648.659293 eV Total energy + Delta-G solvation = -2186.019074 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 183.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.52363 -38.56485 -37.20215 -34.30939 -32.84509 -29.30924 -27.88969 -24.39785 -22.51841 -21.76003 -19.84141 -18.89193 -17.48185 -17.38773 -16.72025 -15.62793 -15.47085 -14.97089 -14.47557 -14.17797 -14.02958 -13.82156 -13.04228 -12.83149 -12.06572 -11.88472 -11.39100 -10.69996 -10.60083 -9.47805 -9.00710 -8.63336 -6.48626 0.89402 1.45391 1.51961 1.62792 1.72930 1.78239 2.43348 2.97144 3.04507 4.04338 4.17875 4.33483 4.61177 4.89766 5.04949 5.34695 5.59292 5.73776 5.90909 5.94853 6.38714 6.53033 6.64935 6.83107 7.31456 8.54851 Molecular weight = 183.07amu Principal moments of inertia in cm(-1) A = 0.066768 B = 0.011574 C = 0.011506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.264037 B = 2418.538316 C = 2432.866936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.015 4.015 3 Si 1.085 2.915 4 H -0.287 1.287 5 H -0.271 1.271 6 H -0.235 1.235 7 C -0.625 4.625 8 H 0.015 0.985 9 C 0.243 3.757 10 H 0.040 0.960 11 N -0.843 5.843 12 C -0.121 4.121 13 C -0.067 4.067 14 O -0.209 6.209 15 C 0.187 3.813 16 O -0.417 6.417 17 C -0.260 4.260 18 H 0.254 0.746 19 H 0.331 0.669 20 H 0.332 0.668 21 H 0.219 0.781 22 H 0.426 0.574 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -6.494 -1.646 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.664 4.664 8 H 0.033 0.967 9 C 0.133 3.867 10 H 0.058 0.942 11 N -0.374 5.374 12 C -0.123 4.123 13 C -0.132 4.132 14 O -0.110 6.110 15 C 0.092 3.908 16 O -0.226 6.226 17 C -0.281 4.281 18 H 0.063 0.937 19 H 0.143 0.857 20 H 0.147 0.853 21 H 0.236 0.764 22 H 0.284 0.716 23 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.827 -4.718 -1.180 11.869 hybrid contribution -1.470 -2.352 0.073 2.774 sum 9.357 -7.069 -1.107 11.779 Atomic orbital electron populations 1.70960 1.08266 1.29694 1.47567 1.27280 0.96131 1.06214 0.91847 0.83512 0.74695 0.71609 0.79561 1.21347 1.19681 1.15969 1.22793 0.96281 0.94909 1.52465 0.96679 1.17539 0.92043 0.88902 0.88240 0.94205 1.59734 1.65024 1.07201 1.05394 1.20358 0.99458 0.97760 0.94687 1.23552 1.04946 0.82992 1.01711 1.83915 1.58160 1.39020 1.29924 1.19872 0.96801 0.90507 0.83600 1.85316 1.69461 1.27678 1.40151 1.20763 1.10539 0.93308 1.03489 0.93747 0.85749 0.85324 0.76420 0.71635 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.70 21.45 0.29 -56.86 14 2 C -0.02 -0.86 5.38 84.65 0.46 -0.41 14 3 Si 1.09 48.46 26.42 68.60 1.81 50.27 14 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 14 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 14 6 H -0.24 -9.09 5.69 99.48 0.57 -8.52 14 7 C -0.62 -35.19 9.05 25.60 0.23 -34.95 14 8 H 0.01 0.94 7.99 -2.91 -0.02 0.92 14 9 C 0.24 11.56 2.73 43.42 0.12 11.68 14 10 H 0.04 1.94 6.86 -2.39 -0.02 1.93 14 11 N -0.84 -35.39 9.19 -174.96 -1.61 -37.00 14 12 C -0.12 -5.26 5.10 -19.94 -0.10 -5.36 14 13 C -0.07 -2.53 11.41 66.95 0.76 -1.77 14 14 O -0.21 -7.10 10.66 16.71 0.18 -6.92 14 15 C 0.19 6.33 8.52 67.10 0.57 6.90 14 16 O -0.42 -10.35 13.65 -68.92 -0.94 -11.29 14 17 C -0.26 -10.47 10.90 22.34 0.24 -10.23 14 18 H 0.25 15.89 8.73 -92.71 -0.81 15.08 14 19 H 0.33 12.92 7.94 -89.70 -0.71 12.21 14 20 H 0.33 13.91 5.50 -89.69 -0.49 13.42 14 21 H 0.22 7.06 7.49 -2.91 -0.02 7.04 14 22 H 0.43 5.20 9.06 -74.06 -0.67 4.53 14 23 H 0.15 5.70 8.06 -2.91 -0.02 5.68 14 Total: -1.00 -68.06 208.25 1.23 -66.84 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.79 Total: 29.09 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 2.28 Total: -34.13 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -1.31 Total: -93.86 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.76 Total: -18.21 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.81 Total: 50.27 kcal Total: -68.06 1.23 -66.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624254.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.236 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds